LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g01911	ATGATTTGGGCTAACTCCATCTCCTCcgttttcttctcccttcttgtttttcttctgatCATACGTTTCTTCCGCAAAACTTCTGTACTTGATATCCTTAAAAAATGGTGGGTTTCCTTTGAAAACCGCTTTCACGTGTACCAGTCCTTCAAAATCCCAATTCATAACGAGCATTTTCAAGAAAACCAACTTTACCAGAAAATTCTACTCTATCTCAATTCACTGCCCTCTGTGGAGGATTCTGATTTTACAAACCTCTTCTCTGGTTCTAAACCCAGTGAAATTTTCCTTCATCTGGATGCCAACCAGACAGTGCATGACACTTTCCTCAGCGCCAAGGTTTCCTGGACGAACGAAAAATCCGAAGATGGAAAATCTGCTCTGATACTGAGAatcaagaagaaagacaaacgCAGAGTTTTCCGTCAGTACTTTCAGCACATTCTATCAGTGGCAGAGGAGGTCGAACAAGGGAAAAGGGAGATTAAGCTGTACATGAATTCAGGAAACGACGAAAATTCACGGTGGCGATCGGTGCCGTTCGCGCACCCGGCGAGCTTCGACACGGTGGCGATGGACTCCGAGCTGAAGAACAAGGTCAAATCCGATCTCGAGCAGTTTTTGAAGTCTAAGCAGTACTATCACCGATTAGGCCGTGTTTGGAAACGTAGCTATCTTCTATACGGTGCGTCCGGTACGGGGAAGTCCAGTTTCATCGCGGCGATGGCGAGGTTCTTGTGTTACGACGTCTATGACATTGATATCTCCAAGGTTTCAGACGACTCTGATTTGAAGATGCTGTTGCTGCAAACGACAAGCAGATCTGTCGTCGTGATCGAGGACCTTGATCGGTTTCTCGCTGGGAAATCGACGGCTGTGAGCTTGTCAGGTGTCTTGAACTTCATGGACGGGATTATATCATGTTGTGGGGAAGAGCGTGTGATGGTGTTCACCATGAACTGTAAAGACCAGATTGATCAAACGGTGATGAGGCCCGGGAGGATTGACCTTCAGATACAGTTTCCGTTATGTGATTTCTCCACCTTCAAGATTTTGGCCAATAGTTATTTGGGTGTCAAGGATCATAAGCTTTTCCCTCAGGTGGAGGAGGTTTTTCAGACGGGGGCCAGGCTCAGCCCGGCCGAGATCGGCGAGATCATGATCTCGAACCGGAATTCACCGAGCCGGGCCTTCAAAACCGTTATCACGGCTCTGCAAACCAACGGCAGCGATGAGAGAAGGGGACAAAGATTGGGAGACAGCGGGTCGGGCCGGAATGGTGAGGATATGGGCGAACCCGGTGGAGTGATTTGTAGAGAGAGCGTTCACACGGTGAGGGAGTTTAGAAAGTTGTATGGGCTTTTGCGGTTAGGAAGTAGGAGGAAAGAGGAGTCAATGAATTCGGAGCCCATAGAAAAAAAAGGCCCACGTATTGAAAGTATAAGCACTTG	1451	0.4624	MIWANSISSVFFSLLVFLLIIRFFRKTSVLDILKKWWVSFENRFHVYQSFKIPIHNEHFQENQLYQKILLYLNSLPSVEDSDFTNLFSGSKPSEIFLHLDANQTVHDTFLSAKVSWTNEKSEDGKSALILRIKKKDKRRVFRQYFQHILSVAEEVEQGKREIKLYMNSGNDENSRWRSVPFAHPASFDTVAMDSELKNKVKSDLEQFLKSKQYYHRLGRVWKRSYLLYGASGTGKSSFIAAMARFLCYDVYDIDISKVSDDSDLKMLLLQTTSRSVVVIEDLDRFLAGKSTAVSLSGVLNFMDGIISCCGEERVMVFTMNCKDQIDQTVMRPGRIDLQIQFPLCDFSTFKILANSYLGVKDHKLFPQVEEVFQTGARLSPAEIGEIMISNRNSPSRAFKTVITALQTNGSDERRGQRLGDSGSGRNGEDMGEPGGVICRESVHTVREFRKLYGLLRLGSRRKEESMNSEPIEKKGPRIESIST	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g01911	483	Gene3D	-	176	339	IPR027417	-
	Bva12g01911	483	PANTHER	BCS1 AAA-TYPE ATPASE	13	427	-	-
	Bva12g01911	483	Gene3D	-	340	406	-	-
	Bva12g01911	483	SMART	AAA_5	221	345	IPR003593	-
	Bva12g01911	483	MobiDBLite	consensus disorder prediction	409	435	-	-
	Bva12g01911	483	MobiDBLite	consensus disorder prediction	461	483	-	-
	Bva12g01911	483	Pfam	Domain associated at C-terminal with AAA	28	118	IPR025753	-
	Bva12g01911	483	MobiDBLite	consensus disorder prediction	461	476	-	-
	Bva12g01911	483	PANTHER	BNAANNG18710D PROTEIN	13	427	-	-
	Bva12g01911	483	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	173	405	IPR027417	-
	Bva12g01911	483	CDD	AAA	222	343	-	-
	Bva12g01911	483	Pfam	ATPase family associated with various cellular activities (AAA)	226	343	IPR003959	GO:0005524\|GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g01911	Bva-Chr12	15285538	15287426	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g01911	217	341	Calmodulin-binding Proteins	AT3G56690	26.619	5.71e-06	47.4