Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01910 atggcggGTTCATCAGAGACGAAATTACTGCAAGATTTGTTATTGTACGCAGCGAGCGCCGCTCTGAGCTGCCTGGTTTTATTTGCGGGGCTCCGACACCTCGACCCGAACCGTGAGGCATCAAAGAAGGCTCTGGAGCACAAGAAAGAGATAGCCAAGCGTTTAGGGCGTCCTCTCATACAAACAAACCCTTACGAGGATGTCATAGCATGTGATGTTATAAACCCTGACCACATTGACGTGGAGTTTGAGTCTATTGGAGGACTGGAAACAATCAAACAAGCTTTGTATGAACTTGTTATACTACCTCTAAAAAGACCTGAACTATTTTCACATGGCAAGCTTCTTGGGCCACAAAAAGGAGTCTTGTTGTACGGACCACCTGGTACTGGGAAAACCATGCTTGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTTTTTATTAACGTAAGAATATCCAACTTGATGAGCAAATGGTTTGGTGATGCTCAAAAACTTGTGGCTGCTGTATTTAGCCTTGCTTATAAGCTCCAGCCTGCCATTATATTCATTGACGAAGTTGACAGCTTTTTGGGTCAGCGTCGCACATCAGATCATGAAGCATTGTTGAATATGAAAACTGAGTTCATGGCTTTATGGGATGGATTTACCACAGATCAGAATGCTCAAGTTATGGTCCTTGCTGCAACTAATCGCCCTTCAGAACTAGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGGTTGCCAGACCCAAGGGAGAGGGTTGAAATACTAAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGATAACATTGACTTTGATCGTGTAGCAGGCTTGTGTGAGGGTTATACTGGTTCAGATCTATTTGAACTCTGCAAGAAGGCTGCCTATTTTCCTATTAGAGAACTGTTggatgaagagaagaaagggaaTCGGTCTCCTGCACCAAGGCCGTTGTCACAGTCAGATTTAGAAAAAGCCCTTGCCACTTCTCAGAAAACAAAGGTTGCTGCGAGTGAATGCATTGGATTAAACATACAGTCACCAAGATGGACGGGGCACGGGGAGTCAGAGTA 1088 0.4338 MAGSSETKLLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFESIGGLETIKQALYELVILPLKRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGLPDPRERVEILKVILKGERVEDNIDFDRVAGLCEGYTGSDLFELCKKAAYFPIRELLDEEKKGNRSPAPRPLSQSDLEKALATSQKTKVAASECIGLNIQSPRWTGHGESE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01910 362 Gene3D - 253 333 - -
Bva12g01910 362 Pfam AAA+ lid domain 274 310 IPR041569 -
Bva12g01910 362 Gene3D - 80 337 IPR027417 -
Bva12g01910 362 CDD AAA 87 252 - -
Bva12g01910 362 SMART AAA_5 118 254 IPR003593 -
Bva12g01910 362 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Bva12g01910 362 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 341 - -
Bva12g01910 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 316 IPR027417 -
Bva12g01910 362 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Bva12g01910 362 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01910 Bva-Chr12 15279141 15283713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01910 39 318 Calmodulin-binding Proteins AT3G56690 32.394 2.14e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01910 K22530 - gmx:100796908 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01910 12 15279141 15283713 Bva06g03012 06 18727016 18731111 ECH
Bva12g01910 12 15279141 15283713 Bva12g01910 12 15279141 15283713 ECH