Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01901 ATGGAGGAAAACGTTGAAAGCTTGGTGAATTCAGAGCCACCTCAGAAtccaaggaagaaaaagagcaaGATAGAGAACAAGAGGAGGTTTAGTGATGAACAAATCAGATCACTTGAATGCATATTTGAGTCAGAATCAAAATTAGAGCCGAGTAAGAAGTTGCAACTAGCAAGAGATCTTGGGTTGCAACCACGCCAAGTTGCGATATGGTTTCAAAACAGAAGAGCCAGATGGAAATCAAAACGGATTGAGCAAGAATACAGGAAACTCAAAGATGAATACGACAATTTAGCATCTCGGTTTGATTActtaaagaaagagaaggagtCTTTGCAAAtagagTTGCAGAAGCTAAGTGATATAATGGAGAACTCTGTTGATGGGAAAAGAGAATGCAGAATCAGGGTTGCTGAGGATAATAGCACAGATGATGTTGACTCAGGCAGTGGACACAGCAATTGGAGAGGTGATGAAGCAAAGCCCAGTTATTCAAACGAGTGTTTTGAGGACAGAGAAGCCATGCATTCgcatgatgaaaatgaaaagagagaaaacacTGGGTATTCTAAGGACAGAGAACACCAAATTcagaagaaaatggaggagCATGAACCCTCGGCATCACTTGAAAAATGGAACAGTGTGGATCCCAGTGGTCTCTTTGATCAGTCTTGTAGCAGTTCACAATGGTTGGATTTCTGGACTTG 707 0.3621 MEENVESLVNSEPPQNPRKKKSKIENKRRFSDEQIRSLECIFESESKLEPSKKLQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFDYLKKEKESLQIELQKLSDIMENSVDGKRECRIRVAEDNSTDDVDSGSGHSNWRGDEAKPSYSNECFEDREAMHSHDENEKRENTGYSKDREHQIQKKMEEHEPSASLEKWNSVDPSGLFDQSCSSSQWLDFWT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01901 235 PRINTS Lambda-repressor HTH signature 52 61 IPR000047 GO:0003677
Bva12g01901 235 PRINTS Lambda-repressor HTH signature 61 77 IPR000047 GO:0003677
Bva12g01901 235 Pfam Homeodomain 27 79 IPR001356 GO:0003677
Bva12g01901 235 MobiDBLite consensus disorder prediction 135 153 - -
Bva12g01901 235 MobiDBLite consensus disorder prediction 162 209 - -
Bva12g01901 235 CDD homeodomain 27 82 IPR001356 GO:0003677
Bva12g01901 235 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Bva12g01901 235 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Bva12g01901 235 Coils Coil 73 121 - -
Bva12g01901 235 MobiDBLite consensus disorder prediction 135 215 - -
Bva12g01901 235 Pfam Homeobox associated leucine zipper 81 122 IPR003106 GO:0006355|GO:0043565
Bva12g01901 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 235 IPR045224 GO:0003700
Bva12g01901 235 SUPERFAMILY Homeodomain-like 13 81 IPR009057 -
Bva12g01901 235 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 235 - -
Bva12g01901 235 SMART HOX_1 24 85 IPR001356 GO:0003677
Bva12g01901 235 Gene3D - 7 87 - -
Bva12g01901 235 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01901 Bva-Chr12 15245896 15247294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01901 7 235 Homeobox Transcription Factor Family AT2G46680 40.239 2.88e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva12g01901 Homeodomain 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01901 K09338 - gmx:100793260 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01901 12 15245896 15247294 Bva06g03020 06 18758474 18759707 ECH
Bva02g02090 02 21602977 21604381 Bva12g01901 12 15245896 15247294 ECH
Bva08g01965 08 13187271 13188684 Bva12g01901 12 15245896 15247294 ECH
Bva12g01901 12 15245896 15247294 Bva12g01901 12 15245896 15247294 ECH