Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01898 ATGGGGCATTGCTGCAGCAAAAATGTTTCTGCCGTCAATAACGAAACGGTCACCGCCGATCACAGCATTAAGCCTCCACATCCGGGAGCATCACCGCTTCCTTCTGGCAACGGAACCAGTACCCACGGTGATGCGACCCCTTGCAGGTATACTCCCGCCAACTCCTTCTCCACTAGTCCCTTTCCGAGTCCTCTGCCTCCTGGAGTGGCGCCGTCACCGGCGAGAACTCCCGGTCGGAAATTTCGATGGCCTCTTCCGCCTCCATCGCCGGCGAAGCCGATCATGGCGGCAATACTAAAGCGACAGGGGAAGTCGAAGCCGAAGGAGGGGCCGATTCCAGAGGAGCAAGGTCAAGGTGGAGAGGGAGAGAGGCCGCTGGATAAGAGCTTCGGATATGGAAAGAATTTTGGGGCGAAGTATGAGCTGGGGAATGAAGTGGGTCGAGGACATTTTGGTCATACTTGCCGTGCCAAAGCAAAGAAGGGAGAGCTTAAGGGACAAGAGGTAGCTGTGAAAATCATATCGAAAGCTAAGATGACAACAGCAATAGCTATTGAAGATGTACGGAGGgaggtgaaaatattgaaagcCTTATCTGGACATACGAATTtagtcaagtttcatgatgcATTCGAGGATGCCAATAATGTCTACATAGTGATGGAATTGTGTGAGGGTGGAGAACTGCTCGACAGAATTCTGGCaagAGGTGGAAGATACTCAGAGGAAGACGCTAAATCTATTGTTGCACAAATTCTAGATGTAGTTGCCTTTTGTCATCTTCAAGGAGTTGTTCATCGTGATTTAAAACCAGAGaattttcttttcgtCTCAAAAGATGGGGATGCTCCAATGAAGGTTATTGATTTTGGTCTATCTGATTTTGTTAGGCCAGATCAACGCTTGAATGATATTGTTGGCAGTGCGTACTATGTTGCACCTGAGGTGCTCCATAGATCTTACAGTGTTGAAGCAGACTTGTGGAGTATCGGAGTTATAACTTACATATTGTTGTGTGGAAGTAGACCATTCTGGGCACGTACTGAATCTGGAATCTTTCGTTCTGTTCTAAGAGCTAACCCAAACCTTGATGATTCACCTTGGCCATCAGTGTCACCTGAAGCTAAGGACTTTGTAAAACGACTTCTGAACAAAGACCACAGGAAAAGGATGACTGCTGCCCAAGCTCTTACTCACCCATGGTTGAGAAATGAAAAACTTGCTATCCCCTTGGACATTTTCATCTATAAGTTAGTCAAGTCATATGTGCGTGCTACACCTTTGAGACGTGCAGCACTGAAGGCTCTCTCAAAAGCTTTGACAGAAGATGAGCTTATTTACCTCAGAGCTCAGTTTAGCCTCCTGGAACCTAAAAATGGCTATCTTTCCCTTGAACATTTTAAAACGGCTCTCATGAAATATGCAACTGATACAATGAAGCAATCAAGGGTccctgaaattttaaatttgATGGAGGCGctctatcataaaaaaatggacTTTGAAGAGTTCTGTGCTGCTGCAATCAGTGTATACCAGCTCGAGGTTCATGAAGAATGGGAGAGAATTGCAACCACAGCTTTTGAGTGTTTTGAAGAGGAAGGAAACCGAGTGGTTTCAGTTGAGGAGCTGGCGCAGGAGATGAATGTTGGTCCTTCAGCTTACTCTTTACTAGGCGATTGGATAAGAAAATCTGATGGAAAACTCAGCTTCCTCGGTTATACAAAGTACTTGCATGGGGTAACAGTTCGTAGTTCTAATACAAGACACCGACAGTTAGTATG 1784 0.4395 MGHCCSKNVSAVNNETVTADHSIKPPHPGASPLPSGNGTSTHGDATPCRYTPANSFSTSPFPSPLPPGVAPSPARTPGRKFRWPLPPPSPAKPIMAAILKRQGKSKPKEGPIPEEQGQGGEGERPLDKSFGYGKNFGAKYELGNEVGRGHFGHTCRAKAKKGELKGQEVAVKIISKAKMTTAIAIEDVRREVKILKALSGHTNLVKFHDAFEDANNVYIVMELCEGGELLDRILARGGRYSEEDAKSIVAQILDVVAFCHLQGVVHRDLKPENFLFVSKDGDAPMKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEADLWSIGVITYILLCGSRPFWARTESGIFRSVLRANPNLDDSPWPSVSPEAKDFVKRLLNKDHRKRMTAAQALTHPWLRNEKLAIPLDIFIYKLVKSYVRATPLRRAALKALSKALTEDELIYLRAQFSLLEPKNGYLSLEHFKTALMKYATDTMKQSRVPEILNLMEALYHKKMDFEEFCAAAISVYQLEVHEEWERIATTAFECFEEEGNRVVSVEELAQEMNVGPSAYSLLGDWIRKSDGKLSFLGYTKYLHGVTVRSSNTRHRQLV 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01898 594 SMART serkin_6 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01898 594 MobiDBLite consensus disorder prediction 17 128 - -
Bva12g01898 594 Pfam Protein kinase domain 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01898 594 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Bva12g01898 594 PANTHER CDPK-RELATED KINASE 3-LIKE ISOFORM X1 53 585 - -
Bva12g01898 594 CDD STKc_CAMK 139 401 - -
Bva12g01898 594 Gene3D Transferase(Phosphotransferase) domain 1 230 415 - -
Bva12g01898 594 Gene3D - 419 570 - -
Bva12g01898 594 MobiDBLite consensus disorder prediction 59 73 - -
Bva12g01898 594 ProSiteProfiles Protein kinase domain profile. 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01898 594 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Bva12g01898 594 SUPERFAMILY Protein kinase-like (PK-like) 139 424 IPR011009 -
Bva12g01898 594 PANTHER SERINE/THREONINE-PROTEIN KINASE 53 585 - -
Bva12g01898 594 SUPERFAMILY EF-hand 435 580 IPR011992 -
Bva12g01898 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Bva12g01898 594 MobiDBLite consensus disorder prediction 33 58 - -
Bva12g01898 594 Gene3D - 441 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01898 Bva-Chr12 15226682 15232380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01898 1 585 EF-hand Containing Proteins AT3G50530 58.034 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva12g01898 Pkinase 7.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01898 - - gmx:100803631 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01898 12 15226682 15232380 Bva06g03023 06 18771766 18777699 ECH
Bva12g01898 12 15226682 15232380 Bva12g01898 12 15226682 15232380 ECH