Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01892 ATGGGGAAGACAAGAGGAAGCTCATGGTTAAATGCTGTGAAAAGGGCTTTCAGGTCACCAACTAAAGAGAATGACAAGAGAAGCAGCAGGAGAAGAGAAGAGCATGAAcaagaggaggaagaaaagAAGAGGGGAAAACGCAGATGGATTTTCAGGAAGCCATATGGTCAAGAGACAGCAGATCAGAAATGTGAAGAAAGAACCATAACCACCATAGCCGATATCACAGCAACAAATAATGCTGTGACTACGTCAATGAAACCTGTTTGTGAGATGGTTGAAGCTGAGCAAAGAAGTGCCATTGCAGTAGCCATGGCAACCACAGCTGCGGCCCAGGCAGCAGTAGCAACTGCTCAAGCAGCTGTGGAGGTTGTTCGCCTTTCCAGGCATCCCTCCATCTTTGTTAGAGATCATTATGCTGCCGTTGTCATTCAAACAACCTTCAGAGGTTATCTGGCAAGGAGAGCTCTTAGGGCACTTAAAGGGTTAGTGAAGCTGCAGGCACTAGTGAGAGGGCATAATATCCGTAAAAGAGCCAAGATAACTCTTAGATGCATGCAAGCTCTTGTTCGAGTTCAAACTCGGCTTTGTGAAGAGAGAGGTAAGAGGGTTTCGCATGAGGGAAGCGCAGATTCCAGATTAAGTGATCCTTTTAGCTTATGGGGGTCGCATTATCCTGATAACAAGTCTATGCAGTCCCAGTCCAGAGATGAAAGTAGCACAGCGGATGATTACTGGATCCACTGGGATGAACACCCTCAGAAGCTGGAAAATTATCGAAGTCTTCTACACAAGACAAAGGAAGTTGCCTTGGCTGACGCTTTCTCTAACCAGATATGGAGAACTAGTGCAGAGCCCTGTGCCAGTGAGGGGGAGCTTGAGAACAATCCCAGAAATCCTGAGCGACGGAGAAGAAGGCACAGAGAGAGCAGCGGTAGAGCTTCATGTGACCAAAGAGAGCCCATAAAAATAGTTGAAATTGACACGTTTAGACCTTACTCCAATGCGCCTTCCACTGATACCGAGAGATCCTACAGTAATCAGATGAGAAGGAACACATTTTGTTTGTCCTCACCTGTGCATCAAGCCCACAACAATCTCTCCCTCCACTCACTTACTCCACCAGCTACAAGAAGGAAGCATTTTCAGGTGCATTCAGCTGGTCCTCGTTGTGAAAAGCCCAACTGTTCAACGATTCAAATGCCCAGTACCATTAACACAGTGCCAAACTATATGGCAGCCACTGCATCAGCCATTGCCCGGTACCGGTCACAAAGCGCACCAAGACAGAGGGTTTCAACcccagaaaaggaaaaatctgtGTCAGTCAGGAAACGCCTATCGTTCCCAGTCCATGATCCTTGTGATACCCTTGCCAATGCAGCAATTGATTCCAGCTGTAACTTTAATGATCCAAGTTTTGAAGAGGAGTACTTGAGATA 1442 0.4556 MGKTRGSSWLNAVKRAFRSPTKENDKRSSRRREEHEQEEEEKKRGKRRWIFRKPYGQETADQKCEERTITTIADITATNNAVTTSMKPVCEMVEAEQRSAIAVAMATTAAAQAAVATAQAAVEVVRLSRHPSIFVRDHYAAVVIQTTFRGYLARRALRALKGLVKLQALVRGHNIRKRAKITLRCMQALVRVQTRLCEERGKRVSHEGSADSRLSDPFSLWGSHYPDNKSMSQSRDESSTADDYWIHWDEHPQKLENYRSLLHKTKEVALADAFSNQIWRTSAEPCASEGELENNPRNPERRRRRHRESSGRASCDQREPIKIVEIDTFRPYSNAPSTDTERSYSNQMRRNTFCLSSPVHQAHNNLSLHSLTPPATRRKHFQVHSAGPRCEKPNCSTIQMPSTINTVPNYMAATASAIARYRSQSAPRQRVSTPEKEKSVSVRKRLSFPVHDPCDTLANAAIDSSCNFNDPSFEEEYLR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01892 479 MobiDBLite consensus disorder prediction 285 318 - -
Bva12g01892 479 MobiDBLite consensus disorder prediction 18 45 - -
Bva12g01892 479 MobiDBLite consensus disorder prediction 423 443 - -
Bva12g01892 479 ProSiteProfiles IQ motif profile. 161 188 IPR000048 GO:0005515
Bva12g01892 479 PANTHER IQ-DOMAIN 5-RELATED 1 474 - -
Bva12g01892 479 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 1 474 - -
Bva12g01892 479 Pfam Protein of unknown function (DUF4005) 342 461 IPR025064 -
Bva12g01892 479 Pfam IQ calmodulin-binding motif 164 180 IPR000048 GO:0005515
Bva12g01892 479 Pfam IQ calmodulin-binding motif 140 158 IPR000048 GO:0005515
Bva12g01892 479 Gene3D - 135 192 - -
Bva12g01892 479 SMART iq_5 136 158 IPR000048 GO:0005515
Bva12g01892 479 SMART iq_5 159 180 IPR000048 GO:0005515
Bva12g01892 479 MobiDBLite consensus disorder prediction 1 45 - -
Bva12g01892 479 ProSiteProfiles IQ motif profile. 137 165 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01892 Bva-Chr12 15200080 15202067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01892 1 474 IQD Protein Family AT1G01110 38.123 2.81e-80 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01892 - - qsu:112008677 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02105 02 21692113 21694781 Bva12g01892 12 15200080 15202067 ECH
Bva08g01981 08 13277700 13280726 Bva12g01892 12 15200080 15202067 ECH
Bva12g01892 12 15200080 15202067 Bva12g01892 12 15200080 15202067 ECH