Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01888 ATGTTACAGAGTAAGATGATGAGTACTCCAAACATTGCCAGACAAGTTGGTGATACAACCTATACAAAGATCTTTGTCGGAGGATTGGCTTGGGAGACCAAGAGAGAAACATTGAAACACTATTTTGAGCAGTTTGGGGAGATCTTAGAAGCTGTTGTTATCACTGACAGAAACACCGGAAAATCAAAAGGCTATGGCTTTGTGACCTTCAAGGACCCAAATTCTGCAATAAAAGCATGTCAGAATCCCTACCCAGTGATTGATGGAAGAAGGGCTAATTGTAATATTGCTGCTCTTGGAAAGAGGAAGTTGAGTGCAAATTCATGGACTATGGTACCAATTCCTATTCAAGGTCCTCCCACTTATTATAATCAGCAGATACCACAGTATACATTACCTTATCCATCCTACAGGTATCCTGGTTATCCTCCCCCACAAGAAACTTATGCAATGAACTACTATAATGTATATGGCGGGCAACACCTTCCGATTCGTTGGCCTCCACAATATGTCCATCCCTTTTATGGCCTGAGACAGTTTGCTCCACCATATATGAAAAAGGAACAATTCTCTGATATGTCAACTCCTCCACTCTTCACAGTCGTTGGCTTACCAGAAGAACACGTTTCATCGTCCCCTTCAATATCCAGCACTGGACAAGTCACACGAGCAGTAGCTACAGCAGGAATGCTTGGATCCTCCTCTGAACAGAAATCTTCAGCTTA 725 0.4248 MLQSKMMSTPNIARQVGDTTYTKIFVGGLAWETKRETLKHYFEQFGEILEAVVITDRNTGKSKGYGFVTFKDPNSAIKACQNPYPVIDGRRANCNIAALGKRKLSANSWTMVPIPIQGPPTYYNQQIPQYTLPYPSYRYPGYPPPQETYAMNYYNVYGGQHLPIRWPPQYVHPFYGLRQFAPPYMKKEQFSDMSTPPLFTVVGLPEEHVSSSPSISSTGQVTRAVATAGMLGSSSEQKSSA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01888 241 SMART rrm1_1 23 95 IPR000504 GO:0003723
Bva12g01888 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 81 IPR000504 GO:0003723
Bva12g01888 241 Gene3D - 2 107 IPR012677 -
Bva12g01888 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 99 IPR000504 GO:0003723
Bva12g01888 241 PANTHER BOULE-RELATED 2 241 IPR037366 GO:0003729
Bva12g01888 241 SUPERFAMILY RNA-binding domain, RBD 7 97 IPR035979 GO:0003676
Bva12g01888 241 CDD RRM_RBM24_RBM38_like 22 97 - -
Bva12g01888 241 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 2 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01888 Bva-Chr12 15187882 15189900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01888 18 98 C2H2 Transcription Factor Family AT2G19380 43.210 9.89e-16 74.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01888 12 15187882 15189900 Bva06g03036 06 18825137 18827001 ECH
Bva12g01888 12 15187882 15189900 Bva12g01888 12 15187882 15189900 ECH