Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01887 ATGGCGGTTGCTGAGAATGCTGGGGCCATAATCGGCTCTTCCACTCAAAATTTGGACAATAGTGTAGCATCGACGGACTCAACTGGTCAGAATGACCTGGAGAAATCGAAACCCAGAACTGGTTCCTTGGGAAATGGTATCGAAGCAAATGTTCAGCCCATCAACGGCGATCAGAATCTGAACGCGGTTTTTAATCACCAGGATATAGTTCCCACGACTGTGTCAGTCCCCAACAGTAACTACAAGCAGCAAATGGCTCAGATGCGAAATGGGTTCGACTCGAATGGGGCCCAGAACCAGCAGATGGTGGTGAACAATGGTGGATATGGGATTAACCAGATGTCGAATGGGGTCATGGATGGAGAAAATGGTGGTGAGAGTTTCAAGCAGGATATGAGAGATTTGGAGGAACTCTTGTCCAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCGCTTACAAATAATCATGGGTACTTAGGTGGTGGGGGGTTTGGCTTCACTAACAATTTTGTACTGCATAATAATTATGGAAATGCAGATGGGAATCCTAACAGAAGGAGGAAGAACGGATATAATCAGGGGAAGCGAAGACTAATCCATAAAGCAGATATGGAGAAGCGAGAAGAGATGACTAGGAGGACGGTTTATGTGTCTGATATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTATGTGGGGATCCAAATTCTATTCTTCGATTTGCTTTTATTGAGTTTACAGATGAAGATGGTGCAAGGGCTGCTTTGAACCTGTCCGGCACCATGCTTGGATATTACCCAGTGCGAGTGCTGCCATCAAAAACGGCCATTGCACCAGTTAATCCAACTTTTTTGCCCAGGTCTGAAGATGAGCGGGAGATGTGCTCAAGAACCATTTATTGTACAAATATTGACAAGAAGGTTTCGCAAGCTGATGTCAAACTTTTCTTTGAATCTCTGTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCAGCATTCAACTCGAATTGCTTTTGTAGAGTTCACTATGGCTGAAAGTGCCATTGCAGCTCTGAACTGTAGCGGTGTGATTTTGGGTTCACTGCCGATAAGGGTAAGTCCTTCAAAGACACCTGTCCGTTCTCGCGCTCCTCGTATTGCAATGCACTG 1202 0.4576 MAVAENAGAIIGSSTQNLDNSVASTDSTGQNDLEKSKPRTGSLGNGIEANVQPINGDQNLNAVFNHQDIVPTTVSVPNSNYKQQMAQMRNGFDSNGAQNQQMVVNNGGYGINQMSNGVMDGENGGESFKQDMRDLEELLSKLNPMAEEFVPPSLTNNHGYLGGGGFGFTNNFVLHNNYGNADGNPNRRRKNGYNQGKRRLIHKADMEKREEMTRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVSQADVKLFFESLCGEVQRLRLLGDYQHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRAPRIAMH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01887 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 388 IPR000504 GO:0003723
Bva12g01887 400 SUPERFAMILY RNA-binding domain, RBD 209 291 IPR035979 GO:0003676
Bva12g01887 400 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 400 - -
Bva12g01887 400 CDD RRM2_CID8_like 308 389 IPR034825 -
Bva12g01887 400 Gene3D - 175 292 IPR012677 -
Bva12g01887 400 Gene3D - 299 394 IPR012677 -
Bva12g01887 400 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 400 - -
Bva12g01887 400 SUPERFAMILY RNA-binding domain, RBD 302 394 IPR035979 GO:0003676
Bva12g01887 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 290 IPR000504 GO:0003723
Bva12g01887 400 MobiDBLite consensus disorder prediction 17 52 - -
Bva12g01887 400 CDD RRM1_CID8_like 214 292 IPR034823 -
Bva12g01887 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 279 IPR000504 GO:0003723
Bva12g01887 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 381 IPR000504 GO:0003723
Bva12g01887 400 Pfam Ataxin-2 C-terminal region 139 153 IPR009818 -
Bva12g01887 400 SMART rrm1_1 216 286 IPR000504 GO:0003723
Bva12g01887 400 SMART rrm1_1 313 384 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01887 Bva-Chr12 15182582 15186744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01887 195 383 Eukaryotic Initiation Factors Gene Family AT1G34140 24.227 1.63e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01887 - - aip:107622933 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01887 12 15182582 15186744 Bva06g03037 06 18828205 18832674 ECH
Bva12g01887 12 15182582 15186744 Bva12g01887 12 15182582 15186744 ECH