Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01885 ATGGACCTGAGCATTTTGGATTGGACTCGTCTGGTGCCACGAGAAGCATCTGTTTTCAGGTTGCTATTGAAGCTTTGTGCCACGATGGCTTGCAGCGAGTTGGCTTGCTCTTACGCCTCTTTGATTCTTCATGATGACGGGATCGCAATCACCGCGGAGAAGATTAATGCTTTGGTGAAAGCAGCCAATGTGGGTGTGGAATCGTATTGGCCGAGTCTGTTCGCCAAACTTGCAGAAAAGAGGAACATTGAGGATCTCATCTTGAATGCTGGTTCAGGTggtgctgctgctgttgcCGTCGCTAATCCTGGTGGTAGTGCCGATGCCGGTGGCGCTGGAAAAGCTGCCGCCCCTGTTGCCGAGGATAAGAAGGAAGAACCAAAGGAAGAGAGTGATGAAGACATGGGATTCAGCTTGTTCGACTA 425 0.4824 MDLSILDWTRLVPREASVFRLLLKLCATMACSELACSYASLILHDDGIAITAEKINALVKAANVGVESYWPSLFAKLAEKRNIEDLILNAGSGGAAAVAVANPGGSADAGGAGKAAAPVAEDKKEEPKEESDEDMGFSLFD 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01885 141 Pfam 60s Acidic ribosomal protein 50 140 - -
Bva12g01885 141 Gene3D - 29 91 IPR038716 -
Bva12g01885 141 MobiDBLite consensus disorder prediction 105 141 - -
Bva12g01885 141 MobiDBLite consensus disorder prediction 118 135 - -
Bva12g01885 141 Hamap 50S ribosomal protein L12 [rpl12]. 34 141 IPR027534 GO:0003735|GO:0005840|GO:0006414
Bva12g01885 141 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 29 141 - -
Bva12g01885 141 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 29 141 - -
Bva12g01885 141 CDD Ribosomal_P1 33 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01885 Bva-Chr12 15169451 15170834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01885 29 141 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.621 1.03e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01885 K02942 - csin:114312388 129.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01885 12 15169451 15170834 Bva06g03040 06 18850464 18852179 ECH
Bva12g01885 12 15169451 15170834 Bva12g01885 12 15169451 15170834 ECH