Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01880 ATGGGTGACGTGGTGTTGAGTGTCGAGGACGTGGAAGTGAAAGTGTCAGAAAGCCAGACCCAGAAGGAAAAGGTTGAGAAAGAGAGTGCAACAGAGAGCGCAACAGAGAGCAAAGGTGGTGAAATGAATGATTTGATGCGGTGGGAGAAGTTCTTGCCGGCGATGACATTGAGGGTGCTCTTGGTAGAAGCTGATGATTCGACTAGACAGATTGTAGCTGCGCTTCTCAGGAAATGCAGCTACAGAGTGGCTGCTGTTCCTGATGGCTTGAAGGCTTGGGAGTTACTGAAGGGAAGACCGCATAACATTGATCTTATATTGACAGAAGTGGATTTGCCATCAATATCTGGCTATGCACTTCTAACATTAACTATGGAGCATGAGATTTGCAAAAACATTCCTGTTATAATGATGTCCAAACAAGATTCAATTAGCACAGTCTACAAATGTATGTTGAAGGGTGCTGCTGACTATCTTGTTAAGCCCCTTAGGAAAAATGAGCTCAGGAATTTGTGGCAGCATGTCTGGAGAAGGAAAGCGTCAACCGTAGTCGCAAATGGCCCCCAAGATGAGAGTGTCGTACAGCAGAAGGCTGAAGACACTGCTGAAAACAATGCTACTTGTAATCGTTCAAGTGGTGATACTGCATGCAgtcaaagaaataaagaattgaTCGAGAAAGGAAGTGACGCTCAGAGTTCTTGTACAAAGCCCGACTTGGAAGCTGAGAGTGCCCCAGTGGATGACTTGCAGGAATTTTCTCGTGTAAACCATGGTGAATCATACCCGACTGAAACAAAGATGCAAGAAGTTGAAACGTGCATTCATTTAGGTCAGACATCGAGCATGCTTGACAGTCATGCTGGAGGATTGACTATCGGTATCTGCAAAAATGGTGAGACAAGCACAGCTCATGGCAAGGATGGTGATCCAGAGTATAACAGGAGTAATATTACCAGTGGTGAGGTTCATGACAATCACTATAAAGTTTCATATAGCTCTTCTAAGGAAGCTATTGACTTTATTGGAGCATTTCTTACTCATCCAAACTGCAGTCACAAAGGTTCCTCAGTTAATTCCACGGGCAAGTTTGACTTCTCTCCACAGTTGGATCTTTCCTTGAGAAGATCTGATTCCAGCAATTTCGAAATTGTCACTGAAGAAAGGCATACCCTCATGCACTCTAATGCCTCAGCTTTCAAGCGGTATACCAGCAGGCAATTGCAAGCTCCACCTGCGGTGCTCATTAACTTCTGCAATCAACAAAGAGAACAAACAACTGATTGTGATAACAATGTCTCCAATATTGCTGTTGGCTGTAACTCAGATAGTTCAACTCCTAGCATGGAAATGAGTATTGTGTCTCCAGCTACTGCTCAGTCAAAAGAATCTGAACTTGCAACTTCACACTCACAGCAACGGCTTTCTCACCCAATTCCAGTAAAGGGTATAAGGTTCAACGATCTGTGCACAGCTCATGGTTCTGTACTGCCTCCAATTTTTCTTGAACAGTCAGGTCAGGTGTCAATGCCAAGTGCAAGTTCAGCTGCTCAGCATGGACCATCTTTCCAGGCGAATGCATTTTATCActcaaatattaaagaaaatagttcGGAGCAGCTTTATGAACCACACGttcaaaatggaaataatGCCGCAAACCAGATTGTGCATATACAGAAACACAAATTAGAAAATGTGGAGGATAAAGGGCATATCTCTTCTGTAACTGATCACAGTGCATGCAGTAGTTTCTGCAATGGAAACGCTAGCCATTTTAATAGTGTTGGTTATGGAAGCAATTGTGGAAGTAATAGCAATGTTGATCAGGTTGGTGGTGTCAGGGCAGCTTCAGAGGGTAAGAATGAAGACCTAAAAAATACTGGAAGTTCTCATCGATCCATCCAAAGAGAAGCAGCTCTAAACAAGTTCCGTTTGAAACGGAAAGAGAGATGCTATGAAAAGAAGGTTCGGTATGAGAGCAGAAAGAAACTTGCAGAGCAGCGTCCTAGAGTGAAAGGACAATTTGTTCGTCAAGTGCACCCTGATCCCCAAGGTGCAGATAAAGATGGCCAATATAGCGTCATTAACGGATTGCACTTCTCAGTGAAGTG 2114 0.4276 MGDVVLSVEDVEVKVSESQTQKEKVEKESATESATESKGGEMNDLMRWEKFLPAMTLRVLLVEADDSTRQIVAALLRKCSYRVAAVPDGLKAWELLKGRPHNIDLILTEVDLPSISGYALLTLTMEHEICKNIPVIMMSKQDSISTVYKCMLKGAADYLVKPLRKNELRNLWQHVWRRKASTVVANGPQDESVVQQKAEDTAENNATCNRSSGDTACSQRNKELIEKGSDAQSSCTKPDLEAESAPVDDLQEFSRVNHGESYPTETKMQEVETCIHLGQTSSMLDSHAGGLTIGICKNGETSTAHGKDGDPEYNRSNITSGEVHDNHYKVSYSSSKEAIDFIGAFLTHPNCSHKGSSVNSTGKFDFSPQLDLSLRRSDSSNFEIVTEERHTLMHSNASAFKRYTSRQLQAPPAVLINFCNQQREQTTDCDNNVSNIAVGCNSDSSTPSMEMSIVSPATAQSKESELATSHSQQRLSHPIPVKGIRFNDLCTAHGSVLPPIFLEQSGQVSMPSASSAAQHGPSFQANAFYHSNIKENSSEQLYEPHVQNGNNAANQIVHIQKHKLENVEDKGHISSVTDHSACSSFCNGNASHFNSVGYGSNCGSNSNVDQVGGVRAASEGKNEDLKNTGSSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPQGADKDGQYSVINGLHFSVK 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01880 704 ProSiteProfiles Response regulatory domain profile. 58 176 IPR001789 GO:0000160
Bva12g01880 704 SUPERFAMILY CheY-like 51 180 IPR011006 -
Bva12g01880 704 MobiDBLite consensus disorder prediction 186 215 - -
Bva12g01880 704 Pfam Response regulator receiver domain 59 170 IPR001789 GO:0000160
Bva12g01880 704 Pfam CCT motif 637 679 IPR010402 GO:0005515
Bva12g01880 704 Coils Coil 8 28 - -
Bva12g01880 704 MobiDBLite consensus disorder prediction 17 34 - -
Bva12g01880 704 MobiDBLite consensus disorder prediction 227 246 - -
Bva12g01880 704 MobiDBLite consensus disorder prediction 17 40 - -
Bva12g01880 704 Gene3D - 55 271 - -
Bva12g01880 704 ProSiteProfiles CCT domain profile. 637 679 IPR010402 GO:0005515
Bva12g01880 704 MobiDBLite consensus disorder prediction 455 475 - -
Bva12g01880 704 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 13 672 - -
Bva12g01880 704 SMART REC_2 57 172 IPR001789 GO:0000160
Bva12g01880 704 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 672 IPR045279 GO:0009736
Bva12g01880 704 CDD psREC_PRR 59 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01880 Bva-Chr12 15145202 15149599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01880 38 681 Response Regulator Gene Family AT5G24470 40.000 6.69e-129 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Bva12g01880 Response_reg 3.9e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01880 K12130 - gmx:100777119 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01880 12 15145202 15149599 Bva12g01880 12 15145202 15149599 ECH
Bva12g01880 12 15145202 15149599 Bva06g03046 06 18878080 18882078 ECH