Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01875 ATGGGTTCAGCAGGAGAGACCCAAATTACTCCAACCCAAGTTTCTGATGATGAAGCAAATCTTTTCGCCATGCAATTAGCCAGTGCTTCTGTTCTCCCTATGGTCCTCAAATCAGCCTTAGAGCTTGATGTCTTAGAAATTATGGCCAAAGCAGGACCTGGAGCTCATTTGTCTCCCTCTGACATTGCTTCTCAGCTCCCAACAAGCAACACTTCAGCACCAGTGATGCTGGACCGCATGCTGCGCCTTTTGGCTTGTTATAACATCCTCACTTGCTCTCTCAGGACACTACCAGATGGCAAGGTTGAGAGGCTCTATGGTCTTGCCCCTGTTGCCAAATTCCTCGTCAAGAATGACGATGGTGTTTCTATTTCTGCTCTTTGCCTCATGAATCACGACAAAATCCTCATGGAGAGCTgGTACCACTTGAAAGATGCAGTTCTGGACGGTGGCATTCCATTCAACAAGGCTTATGGAATGACTGCTTTTGAATATCATGGGACAGATCCCAGGTTCAACAAGGTTTTCAATAAGGGCATGTCTGATCACTCTACCATaacaatgaagaaaattcttgAAACCTATAAAGGCTTTGAGGGTCTCAAGTCTCTGGTTGATGTTGGTGGTGGGACTGGAGCTGTAGTTAACATGATTGTCTCCAAGTATCCCACCATAAAGGGCATTAATTTTGACTTGCCCCATGTCATAGAGGATGCTCCTTCTTATCCAGGCGTTGAGCATGTCGGTGGAGACATGTTTGTCGGTGTTCCAAAAGCTGATGCCGTTTTCATGAAGtGGATATGCCATGACTGGAGTGATGAACACTGCTTGAAATTCTTGAAGAACTGCTGCGAGGCACTTCCAGACAACGGGAAGGTGATTGTGGCTGAATGCATTCTTCCAGTGGCTCCTGACTCTAGCTTAGCCACAAAGGGCGTTGTGCACATAGACGTTATCATGTTGGCTCATAACCCAGGTGGAAAAGAGAGAACAGAGAAAGAGTTTGAGGCCTTGGCTAAGGGTGCTGGATTCCAAGGTTTCCGAGTAATGTGCTGCGCTTTTAACACCTATGTCATGGaatttctaaagaaaattta 1097 0.4503 MGSAGETQITPTQVSDDEANLFAMQLASASVLPMVLKSALELDVLEIMAKAGPGAHLSPSDIASQLPTSNTSAPVMLDRMLRLLACYNILTCSLRTLPDGKVERLYGLAPVAKFLVKNDDGVSISALCLMNHDKILMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLKSLVDVGGGTGAVVNMIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVGVPKADAVFMKWICHDWSDEHCLKFLKNCCEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKGAGFQGFRVMCCAFNTYVMEFLKKI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01875 365 Gene3D - 1 115 IPR036388 -
Bva12g01875 365 SUPERFAMILY "Winged helix" DNA-binding domain 15 118 IPR036390 -
Bva12g01875 365 CDD AdoMet_MTases 204 295 - -
Bva12g01875 365 PANTHER BNAA10G07270D PROTEIN 1 364 - -
Bva12g01875 365 PANTHER O-METHYLTRANSFERASE 1 364 IPR016461 GO:0008168
Bva12g01875 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Bva12g01875 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 361 IPR029063 -
Bva12g01875 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Bva12g01875 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Bva12g01875 365 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Bva12g01875 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01875 Bva-Chr12 15121537 15124074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01875 1 365 Monolignol Biosynthesis Gene Families AT5G54160 77.534 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01875 K13066 - gmx:100780100 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01875 12 15121537 15124074 Bva12g01875 12 15121537 15124074 ECH