Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01847 ATGGAAACTCTAAAAGCTGCAATTCCTGAGAATTTGAAGCGAATGATTAGAGAGAGCAGCACCGATGATCTTCGTAGCACTTGTTCTTCTCTTCACGGTTTCTTTCAGCATTTCGAGCCGTTTCACCGAATGATTAGTGACTTAGCGGATCCAGAAAAGGCTCTGTGTGGTAAGAACACGGATGCTGCATTGGAGTCCAAGCAGCTTGGAAACCAGTGCTTCTCGAACGGAGATTATAGCAAAGCGTTGGATTGCTATACTCAGGCACTACGTATGGCTCCTTTGGAGGCTTGTGACGGGGACAAAAATGTGGTTGCAACATTATATATCAATCGAGCAGCAGTATTGCATAAAATGAATCTTTCAATAGAGTGCTTGCGAGATTGCATACGAGCTCTTCGGATATGTCCTAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCCTCactagaaaattataaagatgCAATCTGTGACTTAAATGTGGCTAAGAGTGTGGAATCATCATCTGGTGGGAAGAAACAAATAGAAAGTGagatacaaaaaattttggacCAGTGTGGAAGGATAAGTCCAGTGGGACGCCATCAGAACACCTTGAATACTATGGGTGAGATACCCCAAGTAAGGCTACAGTGTGTCACCATCCCTGATAAAGGTAGAGGTATGACATCTCCATGTGATATCTCTGAAGCATCTCTGGTTCATATTGAAGAACCTTATGCTATgaTAATATTAAAGCAGTGCCGAGAAACCCATTGCCATTACTGCTTGAATGACCTACCTGCTGATATAGTTCCCTGTAGTTCATGTTCAATACCATTATACTGCTCCCAGCAGTGCCAGATATGGGCAGGAGGGCAAATGTTTCGGGTATACCCTGAAGACCATCACATTGTTGAAGGTCTACCCAATGATCTCAGAGGATATGTTTCAGAAATTATTCTTGGAAATGATTCTGAACAGGAAATTAAGGATATTCCTGAACATAAACATGAATGTCAAGGTGTACAATGGTCTGCAGTATTGCCATCTGAGATAGTTTTGGCTGGTCGAATACTTGCTAAGTTTTTGCAGAGGAGTGCATCAATAGACATTGCCAACTTTGTGGAAAGTCTGGAGCTTTCTCATTCTTATACACAAATGCCGTCTGAAAGCAAATTGGAATTGCATATCTATGCCATCGTACTGTTATATTGTCTCAAACACTCTTATGGTGCTGCATTTTCTGTAGATGGAGTTCTTATGTCACAgGTTGTcataattatttctcaaattagAGTGAATTGTATGACTATTGCTCAAATGAAATCAATAGATGCTCATTGGCGGCCAGATAAGTTTGGTGAATCTGGACCCAGGACTTACTTAACCAGTAGTATGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCCGGCAGTTTGTTCAACCATTCTTGCCAGCCAAATGTTCATGCATATTTCCTTTCGCGTACTCTTTGTATAAGAACAACAAAAGTTGTAGCAGCTGGCTGTGAGCTGGAATTGTCTTATGGTCCACAGGTTGGACTATGGGATTGTAAGGATCGCCTCAATTTTCTAAAAGATGAGTATGCATTTCAATGTGGATGTAGTGGTTGTTCAGAAGTGAATCTATCTGACATTGTACTAAATGGTTTTCACTGTATCAATCCAAATTGTCCTGGTGTAGTATTGGAAAGCAGAGTAGTTGACtgtgaaaagaagaagattaaGCACTTCCCTAATGCTGACCAAGTTTCCAAGAATGACGAAATCTATGATGTGTGTTTCATTGCATTCAACCAAAACAATGAGTCCAATCATGTTCGACCTGGATGCTGTTTAAAATGTGGTTCTTACTGTAATTTAGAGTCTTCTCGTACAACAGTTAATAAAGCTTGGAAATGTATTGAAAGATTGCAGGATGCAATAGTGTCGAAAGAACTTTCCAAAACTACAATTTCAGATGCTTTGAAATCCCTTCATTTGCTCAGATCAAAACTGCATGCGTACAACAGGCGCATTGCAGAGGCAGAGGACAATCTTGCCCAAGCATTTAGTTTGGTGGGAGAATTACAATTAGCAAAGGACCATTGTAAAGCATCTATCCAGATTCTGGAGAAGCTATATGACCCTGATGATATTGTCATTGCCTATGAACTTGTGAAGCTTTGTTCCATTCAGCTTTCTTTGGGTGACAGTAGGGTTGCGGACAGCATAAATCGAATGAGTGATATCTGCTCACGTTACTACGGACCTCACGCAAACTTAGTATTCCCTCATCTTCTAGATCTTGGGAGAGAAATCAAGAATTTTTA 2330 0.397 METLKAAIPENLKRMIRESSTDDLRSTCSSLHGFFQHFEPFHRMISDLADPEKALCGKNTDAALESKQLGNQCFSNGDYSKALDCYTQALRMAPLEACDGDKNVVATLYINRAAVLHKMNLSIECLRDCIRALRICPSYAKAWYRRGKANASLENYKDAICDLNVAKSVESSSGGKKQIESEIQKILDQCGRISPVGRHQNTLNTMGEIPQVRLQCVTIPDKGRGMTSPCDISEASLVHIEEPYAMIILKQCRETHCHYCLNDLPADIVPCSSCSIPLYCSQQCQIWAGGQMFRVYPEDHHIVEGLPNDLRGYVSEIILGNDSEQEIKDIPEHKHECQGVQWSAVLPSEIVLAGRILAKFLQRSASIDIANFVESLELSHSYTQMPSESKLELHIYAIVLLYCLKHSYGAAFSVDGVLMSQVVIIISQIRVNCMTIAQMKSIDAHWRPDKFGESGPRTYLTSSMEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLCIRTTKVVAAGCELELSYGPQVGLWDCKDRLNFLKDEYAFQCGCSGCSEVNLSDIVLNGFHCINPNCPGVVLESRVVDCEKKKIKHFPNADQVSKNDEIYDVCFIAFNQNNESNHVRPGCCLKCGSYCNLESSRTTVNKAWKCIERLQDAIVSKELSKTTISDALKSLHLLRSKLHAYNRRIAEAEDNLAQAFSLVGELQLAKDHCKASIQILEKLYDPDDIVIAYELVKLCSIQLSLGDSRVADSINRMSDICSRYYGPHANLVFPHLLDLGREIKNF 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01847 776 Pfam SET domain 460 516 IPR001214 GO:0005515
Bva12g01847 776 ProSiteProfiles SET domain profile. 212 516 IPR001214 GO:0005515
Bva12g01847 776 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Bva12g01847 776 SMART tpr_5 63 96 IPR019734 GO:0005515
Bva12g01847 776 SMART tpr_5 680 713 IPR019734 GO:0005515
Bva12g01847 776 SMART tpr_5 106 139 IPR019734 GO:0005515
Bva12g01847 776 SMART tpr_5 140 173 IPR019734 GO:0005515
Bva12g01847 776 Gene3D Tetratricopeptide repeat domain 37 194 IPR011990 GO:0005515
Bva12g01847 776 Gene3D Tetratricopeptide repeat domain 604 773 IPR011990 GO:0005515
Bva12g01847 776 SUPERFAMILY TPR-like 63 710 IPR011990 GO:0005515
Bva12g01847 776 Coils Coil 665 692 - -
Bva12g01847 776 Gene3D SET domain 421 548 IPR046341 -
Bva12g01847 776 SUPERFAMILY SET domain 199 546 IPR046341 -
Bva12g01847 776 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 771 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva12g01847 SET 5.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01847 K24634 - gmx:100783548 1102.81