Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01838 ATGGAAACTTCGGGTGCTAATTCAGACCAATATGCCAATTCTTCTGCGTCATCATCTGCGGTAGgtgtaaatattaatagtaACAGTAATAGCAATGCTGTAACATGGTATGGGATGCAGTTGCCTGCTGTAAGCCCCTTTCGTTCTccactttcctttttattggATTACTCGGGCATCCTCCGCTCAAGTTCTACGGCCCATGATTCTGGGGCTGTAACAATCAACGACAGTGCTCCCATTTCGGAAGTACGACCCCAGCTTCGAATTCAGTCGCCTGATCCTGCTACAGGCACCGAATGCAGCAGCACCAGTAGTTCTGGGGAGGTTTCTATACGGATCATTGGAGCTGGAGAACAAGACCATAATGCAGGGTTAGATTCTGTTTCTTCACCCTCCCAAAATCAGCTTGGAGAAGTTGGGTATGCCGAGAGTGATGATTTGATGGGGAATAGAGGTAGAGTGCCCACATTGGATGATGATGAGGAGGGCCGGAGTGGAATTATTGTGGGTGAGAGAGTTCCTCTTGTCTCTTCATCTACATCGGCTGGTAGTGGACAGGTAGATGGAGATACTGGTGATGGCTTGGAAAGCAACAGTAGGGATTCATCCTCTTACCAGCGGTATGATATTCAGCAGATTGCAAAGTGGATTGAGCagattcttcctttctctttgttaTTGTTGGTGGTTTTCATTCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATTTCAGCTGTGATGTTCAAGTCTAATGAAATTGTAAAGAAGCAGACAGCTCTAAAGGGTGATAGAAAAGTGCCTATTATTGTCGGTATCTCTTCTGCCTTCATGCTTCACGTAATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGATCATGCTTCCTCCAAAAGCAACGCCTCCTTTTTGGCACACAATATTCATCATTTTGGttaatgATACACTGGTGAGGCAAGTAGCAATGGCTTTCAAGTGTTTACTTCTTATATATTACAAGAATGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACCCTGGTTGAGTACACACTGCTGTTGTATCGAGCATTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTAAACAAGGATTATGGAAGTCTGTTTTCGTCGCTGACCACAGGGTTGTATTTAACCTTCAAGCTAACTTCTGTTGTTGAGAAGGTCCAATGCTTCTTTTCTGCCTTAAAAGCATTATCAAGAAAGGACGTCCATTATGGAGTTAACGCTACAATGGAACAGGTAAATGCAGCAGGCGACTTATGTGCTATATGCCAAGAGAAGATGCATTCTCCTATCTTGTTGCGCTGTAAACATGTTTTCTGCGAGGAGTGCGTGTCTGAATGGTTCGAGAGAGAAAGGACTTGCCCACTATGCAGGGCATTGGTGAAACCTGCTGATCTACGAACCTTTGGGGACGGATCGACAAGTCTGTTTTTCCAGTTGTTTTA 1502 0.4281 METSGANSDQYANSSASSSAVGVNINSNSNSNAVTWYGMQLPAVSPFRSPLSFLLDYSGILRSSSTAHDSGAVTINDSAPISEVRPQLRIQSPDPATGTECSSTSSSGEVSIRIIGAGEQDHNAGLDSVSSPSQNQLGEVGYAESDDLMGNRGRVPTLDDDEEGRSGIIVGERVPLVSSSTSAGSGQVDGDTGDGLESNSRDSSSYQRYDIQQIAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVPIIVGISSAFMLHVMCIYWWYRNDDLLYPLIMLPPKATPPFWHTIFIILVNDTLVRQVAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFFSALKALSRKDVHYGVNATMEQVNAAGDLCAICQEKMHSPILLRCKHVFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01838 500 MobiDBLite consensus disorder prediction 88 109 - -
Bva12g01838 500 MobiDBLite consensus disorder prediction 142 164 - -
Bva12g01838 500 MobiDBLite consensus disorder prediction 1 20 - -
Bva12g01838 500 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 500 - -
Bva12g01838 500 SUPERFAMILY RING/U-box 430 482 - -
Bva12g01838 500 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 500 IPR044235 GO:0061630|GO:1904294
Bva12g01838 500 MobiDBLite consensus disorder prediction 92 109 - -
Bva12g01838 500 CDD RING-HC_RNFT1_like 438 477 - -
Bva12g01838 500 Pfam Zinc finger, C3HC4 type (RING finger) 437 480 - -
Bva12g01838 500 ProSiteProfiles Zinc finger RING-type profile. 439 477 IPR001841 -
Bva12g01838 500 SMART ring_2 439 476 IPR001841 -
Bva12g01838 500 ProSitePatterns Zinc finger RING-type signature. 454 463 IPR017907 -
Bva12g01838 500 MobiDBLite consensus disorder prediction 178 202 - -
Bva12g01838 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 487 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01838 Bva-Chr12 14941824 14947660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01838 1 500 C3H Transcription Factor Family AT5G01960 58.084 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01838 - K22379 gmx:100784614 618.231