Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01837 ATGCGCTTTGCCAGCGTGAACCTAACGAGTCCGCAGATAGACGTCGCCATGGGGAGGAGACCTGCAAGGTGCTATCGccaaatcaaaaacaaaccTTACCCCAAATCACGTTTCTGCCGAGGTGTCCCTGATTCCAAGATCAGAATTTATGATGttggaatgaagaagaaaggagtTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCATTGGAAGCTGCTCGCATTGCTTGCAACAAGTACATGGCCAAATATGCTGGAAAGGATGCTTTCCACTTGAGAGTTAGGGTACATCCATTCCATGTGCTTAGGATCAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACAGGAATGAGAGGTGCATTTGGAAAGCCTCAGGGTACTTGTGCAAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTTCGCTGCAAGGACAGCAACAGCCATCATGCCCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTGTTAGCAGGAAGTGGGGATTCACCAAGTTTAGCCGTACTGATTATCTGAAGTTTAAGTCGGAGAACAGGATTATGCCGGATGGTGTAAATGCCAAGCTTCTTGGATGCCATGGACCATTGGCTGTTCGTCAACCTGGAAGAGCATTTATGTCCAGTGCAACTGCTTA 713 0.4544 MRFASVNLTSPQIDVAMGRRPARCYRQIKNKPYPKSRFCRGVPDSKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKFKSENRIMPDGVNAKLLGCHGPLAVRQPGRAFMSSATA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01837 237 Gene3D Ribosomal protein L10e/L16 17 234 IPR036920 GO:0003735|GO:0005840|GO:0006412
Bva12g01837 237 TIGRFAM uL16_euk_arch: ribosomal protein uL16 17 190 IPR001197 GO:0003735|GO:0005840|GO:0006412
Bva12g01837 237 ProSitePatterns Ribosomal protein L10e signature. 124 145 IPR018255 GO:0003735|GO:0005840|GO:0006412
Bva12g01837 237 PANTHER 60S RIBOSOMAL PROTEIN L10 17 234 IPR001197 GO:0003735|GO:0005840|GO:0006412
Bva12g01837 237 CDD Ribosomal_L16_L10e 57 182 IPR016180 GO:0003735|GO:0005840|GO:0006412
Bva12g01837 237 SUPERFAMILY Ribosomal protein L16p/L10e 20 189 IPR036920 GO:0003735|GO:0005840|GO:0006412
Bva12g01837 237 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 17 234 - -
Bva12g01837 237 Pfam Ribosomal protein L16p/L10e 28 182 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01837 Bva-Chr12 14936574 14940337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01837 17 236 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.455 3.80e-142 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01837 K02866 - gmx:100305619 442.195