Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01829 ATGGGTAGGCGAAAACAAAGTAGACCACATCGGTCCGGTGGAATTATATTAGAAACGCCAACTACTGCTGAAGCAGAAGTGGATAAACATAGAACAGAAGAAACAGGGGAAGAACCGAAGGATGAGTTTGGCGAAATTGATAAACCTTACTTTGTGGATGTTGATAGGTCCAGTTGGTTATCAAATGAACACCTTGATATATCTGAGATTGTTTTAacacatttaaatttgagagaaGGCTTTTCAGTTTCTGAACTGTCTAAGGATTTTTATCAAGATTCTCGGTATTCTTTAAGGTTTCGGCTGTGTAATGtcaataattttcttggtCGAATTAAATTAGGCCATTGGCCTGTATTGTCTTCTTATGATATTCATCTAGAGTTAGTAAAAAGAGGAACCTCAGACGAAATTGAAACATGTACGGTGTTGTTATCTGGAATTTTTGATGGCCCTGACGAAGGTGTATCTGGTCTTGTTCACTTGGCAAGtttgaaattcttttcatTGAGGCTGGTTCATGGGCTTAAATTTTCAGAGGACATGCTTTCCCTTAGGATTAGAGTTGAGGTGCTAAAGGGTGCTTTTGATGCATGTGAGTCTCTTCTTGATGGTTCCAGACAAGTATGGAAAAAGAGTATGATAAATGTCATGTCTTGGCTACGTCCTGAAGTAATGACTTCAGAACTTAGGTATGGGGTTGTTAGCCATATTAAAATGGAAGTTAATCAACCAAAAGAGATGGGAGATGATACTTGCAGCACCAGGAAACGTTCAAGGTTTGATCCTGCAGGATTTTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCCATGCTTGAAGATGACATACCTGACTTACTTCCTGAGTTGAGACCTTATCAACGACGCGCTGCTTTCTGGATGGTAGAACGAGAGAAAACAATAGCAGGAAGTCAGGgcgaaagagaaagaagtcaGTTTCATTCTCCCTTATGTGTGCCGGTGGAGTTTATTGACAGTAGTGGTATAATGATCTTCAATCCATTCAGTGGAAATATTTCATTGTCTCCAGATTCTTCTTCACCTTATGTTTTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGGAAAACTGTTGAACTACTTGCTTGCATCTTTGCTCACCAGAGATCAGCATCTGATTGTGGCATTCTAATGGATTCTGCATTGGAAGATAATGGGGatcaaaaattcaattttaaaaggcTCAAGAGAGAACGTGTTGAATGCACATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGACTGTGTTGGTTATTcaccaaaaggaaaaactttgaaatcaaAACAAGGATCTGAAAGCAAGAAACTCAAAACCACCATAGCTGTGAGGGATGGTAAATATATATGCCAGATCTGCTCTGAACTAATACAAGCTACTGAATCGCCTATTGCTTCCGGCGCCACTCTTATTGTCTGTCCGGCTCCAATTTTGCCCCAGTGGCATGATGAGATTAGACGTCATACACGTCCAGGATCCTTGAAAACTTATGTTTATGAGGGCGTACGGGAAGCATCTTTCTCCAATACATCTCTTGTGGATATAAGTGAACTTGCTGGTGCTGACATTGTATTAACAACCTATGACGTGCTTAAAGAGGACTTGTCCCATGATTCTGATCGACATGAAGGTGATCGACATTTTTTGAGATTTCAGAAAAGgTACCCTGTCATCCCAACTGTTCTTACCAGAATATACTGGTGGAGAGTTTGTATGGATGAGGCTCAAATGGTAGAGAGTAATGCTGCTGCTGCCACTGAAATGGCTCTTCGACTTAATGCACAATATCGTTGGTGCATTACGGGGACTCCCATTCAGCGCAAGCTTGATGATTTATATGGACTTCTACGGTTCCTTAAAGCAAGTCCTTTCAATACATACAGGTGGTGGACTGAAGTTATTCGAGATCCTTATGagAAGGGAGATATTGGAGCTATAGAATTCgcacataaaattttcaagcatatCATGTGGCGATCTTCGAAAGAACATGTTGCGGATGAGCTGCAGCTTCCCTCCCAGGAGGAGTGCCTCACTTGGCTCACTCTCTCACCAATAGAAGAACACTTCTACCAGAGGCAACATGAAACTTGTGTTAATTATGCTCATGAAGTTATAGAAAGTTTAAGAAATGATATTCTCAATAAAACAGTCCCAGGTGGTTCTGCAACTTCAGATGGTTTGTCTGATCTTTTTGTCACTCATGCTGAAGCAGGGAAGCTATTGAATGCTCTGCTGAAGCTTCGCCAGGCATGTTGTCACCCTCAGGTTGGAAGTTCTGGGTTGCGTTCTCTGCAGCAGTCACCCATGACCATGGAGGAAATACTAATGGTTCTTATAAATAAGACTAAGGTAGAAGGTGAGGAAGCTCTCAGGCGGTTAGTTGTTGCTTTGAATGGACTTGCAGCAATAGCTATTATACAGAAGGATTTTTCTCATGCTGCCCTACTATACAATGAAGCACTGGCTTTAGCAGAAGAGCATTCAGAAGATTTCCGTCTGGATCCTTTGTTAAATATCCACATTACTCATAATCTTGCTGAGATTCTTCCACAGACTACAAACCTTTCCCTAAGTTTTCCCtccaaagaaaatcaattctcTGGAACTTGTGCACGTAGGACATCCAGAAAACATGACATTGAAAAGGCTGATCATTGTCTTCTGAAGAGGCAAAAAGTGAGTGTCTCGGATGATTCAGGTTTCACTATGGCTTGTGGAGAACCACAGGATGCTACATCAAGTTTATCAGAAAATGatgtaaatgaaaatcaaGAATCTGATAGTGTATCAGACGATTCACTCAAATATCTGATATCAGAATGTGAAGAGTTAAAACAGAAGTTCTTATCTGTATTCAGTTCAAAGCTATCTGCATCTCAACAGGAGTTTCAAAAATCTTATATGCAGGTTTGTAATGCATGTAGTGACAAAACAAATGAACAAAGCACTTGGTGGTTAGATGCACTTCACCATGCTGAGCAGAACAAGGATTTATCAACTGAATTGATTAGAAAGATTGAAGAAGCCATCTCAACTTCAAACAATTCAAAGTCATCAAGAATTGCTGCTCGTTTCAGAAGCATAACCACTCTGAAGTATCAAATACAGACAGGTTTGGATCAATTAGAAGCCTCTAGAAAAGTGCTAGTTGATCGAATTTTAGAAATTGATCATACAATGCAAAAACCAAAGGAAGAGGACATTGAGCGTATGGGTAGATGTCGAAATTGTCAGCCTAATGGTGATGGTCCTCCATGTGTTATGTGTGAGCTAGATGAATTGTTTAAGgATTATGAAGCAAGAATTTTTTCACTTAAGAATGAACGTGGAGGGATAATTACCTCTGCTGAGGAGGCAATAGATTTACAGAAGAAAAATTCTGCACTGAATCGTTTCCTCTCAAAACTATCCCAAGCTAATCATGGCTCAATGGTATCTGATATTGGCTCTGaagaatcaaagaaaagaaatgttgGGGAAAGAGTTGTGGTTTCAAGATCAGCATCTCAATTGGAGGTTATGCTTGGAGCTATTAAGAGCTATTGCAAGTCTCACTTAGGAAGAGAGATCGTTTCAGCAGCCACCAGTCATTTACATACGCTTGAGCTATTGCGAAAGGAGTTCAGTAATGCAAGGCTTTTAGCAATAGCACAAGCTCAATATCTGCTTGCAcatgatgaaataaaaatggcaATTTCCCGATTGCATCTGAGGGCAAATGAACATGACAAATCACTTGACGCTTTAGGTGAAGATGAACTGTGTGCCTCTAGCTCTAATTTTTCCCATGATAAATTGATGTCGTTGGCCTTGTTGTCGCAGATAAAAGGAAAACTCCGCTACCTAAAGGGTTTGGTGCAATCTAAACAAAAACTGCCACTGGAAAGTTCAAATAGTTCTTCCTCCACTCAAGAGACAACTACGATGTCAAACTTGATGGAAGAGAAAGGTCAATTCATATCCAAAGCTGATGAGGAAACATGCCCAATTTGTCAAGACAAGATAGGCAGTCAGAAAATGGTTTTTCAATGTGGGCATGTTACATGTTGTAAATGTTTATTTGCTATGACCGAGCAAAGACTTCAAGTTAAATGGGTGATGTGCCCCACATGCCGGCAGCACACTGATTTTGGGAACATTGCTTATGCCGTTGATAGACAGAATGAATCTTCCAATTCTTCTGTGCTGCATAAAATTGACAGCCATGAAAAATGGGAAGCATCCATACCTGTTAAAGGCTCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGATCAAGTCGACAGATTCTAAAGCAAAAGTCCTTGTATTTTCAAGTTGGAATGATGTTCTTGATGTGTTGGAACATGCCTTTGCTGCCAATGACATCACATACGTCCGAATGAAAGGAGGCAGAAAATCACATGTTGCTATCAGTCAATTTAGAGGACAGCAGGATGGCAGAAAAGAAGATGACGACGTTAAATCCCAGAAACcaacatcaaaatattttcaggtgttattaattttaatccaACATGGAGCTAATGGCCTCAATCTCTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCTCTACTCAACCCAGCTGCAGAAGCACAAGCTATCAGCCGTGTACATCGGATTGGACAGAAAAACAAGACTCTCATTCATCGTTTCATTGTAAAAAACACAGTTGAAGAAagcatatataaattgaatagAAGCCGGAGCAACCATAAATTCATCAGCGGGAACACCAAAAATCAAGATCAACCTGTTTTGACCCTGAAAGACGTTGAATCCTTACTAGCTACAGCCCCATTACCCGTGCCAGAAAGTGATGAAAAGCCCGGTGCAAGTCTGAGGCATTTGCCGCCTTCTGTTGCTGCTGCTATTGCTGCTGAGAGAAGACTAAGTGAACAAAGGACAtg 5012 0.3891 MGRRKQSRPHRSGGIILETPTTAEAEVDKHRTEETGEEPKDEFGEIDKPYFVDVDRSSWLSNEHLDISEIVLTHLNLREGFSVSELSKDFYQDSRYSLRFRLCNVNNFLGRIKLGHWPVLSSYDIHLELVKRGTSDEIETCTVLLSGIFDGPDEGVSGLVHLASLKFFSLRLVHGLKFSEDMLSLRIRVEVLKGAFDACESLLDGSRQVWKKSMINVMSWLRPEVMTSELRYGVVSHIKMEVNQPKEMGDDTCSTRKRSRFDPAGFYEAIKPSKAEPMLEDDIPDLLPELRPYQRRAAFWMVEREKTIAGSQGERERSQFHSPLCVPVEFIDSSGIMIFNPFSGNISLSPDSSSPYVFGGILADEMGLGKTVELLACIFAHQRSASDCGILMDSALEDNGDQKFNFKRLKRERVECTCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPKGKTLKSKQGSESKKLKTTIAVRDGKYICQICSELIQATESPIASGATLIVCPAPILPQWHDEIRRHTRPGSLKTYVYEGVREASFSNTSLVDISELAGADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTVLTRIYWWRVCMDEAQMVESNAAAATEMALRLNAQYRWCITGTPIQRKLDDLYGLLRFLKASPFNTYRWWTEVIRDPYEKGDIGAIEFAHKIFKHIMWRSSKEHVADELQLPSQEECLTWLTLSPIEEHFYQRQHETCVNYAHEVIESLRNDILNKTVPGGSATSDGLSDLFVTHAEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLINKTKVEGEEALRRLVVALNGLAAIAIIQKDFSHAALLYNEALALAEEHSEDFRLDPLLNIHITHNLAEILPQTTNLSLSFPSKENQFSGTCARRTSRKHDIEKADHCLLKRQKVSVSDDSGFTMACGEPQDATSSLSENDVNENQESDSVSDDSLKYLISECEELKQKFLSVFSSKLSASQQEFQKSYMQVCNACSDKTNEQSTWWLDALHHAEQNKDLSTELIRKIEEAISTSNNSKSSRIAARFRSITTLKYQIQTGLDQLEASRKVLVDRILEIDHTMQKPKEEDIERMGRCRNCQPNGDGPPCVMCELDELFKDYEARIFSLKNERGGIITSAEEAIDLQKKNSALNRFLSKLSQANHGSMVSDIGSEESKKRNVGERVVVSRSASQLEVMLGAIKSYCKSHLGREIVSAATSHLHTLELLRKEFSNARLLAIAQAQYLLAHDEIKMAISRLHLRANEHDKSLDALGEDELCASSSNFSHDKLMSLALLSQIKGKLRYLKGLVQSKQKLPLESSNSSSSTQETTTMSNLMEEKGQFISKADEETCPICQDKIGSQKMVFQCGHVTCCKCLFAMTEQRLQVKWVMCPTCRQHTDFGNIAYAVDRQNESSNSSVLHKIDSHEKWEASIPVKGSYGTKIEAVTRRILWIKSTDSKAKVLVFSSWNDVLDVLEHAFAANDITYVRMKGGRKSHVAISQFRGQQDGRKEDDDVKSQKPTSKYFQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKNTVEESIYKLNRSRSNHKFISGNTKNQDQPVLTLKDVESLLATAPLPVPESDEKPGASLRHLPPSVAAAIAAERRLSEQRT 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01829 1670 Pfam Zinc finger, C3HC4 type (RING finger) 1358 1401 IPR018957 GO:0046872
Bva12g01829 1670 Gene3D - 480 710 IPR038718 -
Bva12g01829 1670 MobiDBLite consensus disorder prediction 23 43 - -
Bva12g01829 1670 SMART helicmild6 1479 1576 IPR001650 -
Bva12g01829 1670 MobiDBLite consensus disorder prediction 1 43 - -
Bva12g01829 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 1631 IPR027417 -
Bva12g01829 1670 SUPERFAMILY FYVE/PHD zinc finger 412 484 IPR011011 -
Bva12g01829 1670 SMART ring_2 1358 1401 IPR001841 -
Bva12g01829 1670 ProSiteProfiles Zinc finger RING-type profile. 1358 1402 IPR001841 -
Bva12g01829 1670 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1650 - -
Bva12g01829 1670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1451 1627 IPR001650 -
Bva12g01829 1670 CDD SF2_C_SNF 1445 1587 - -
Bva12g01829 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 479 IPR013083 -
Bva12g01829 1670 ProSitePatterns Zinc finger PHD-type signature. 416 482 IPR019786 -
Bva12g01829 1670 SUPERFAMILY RING/U-box 1350 1406 - -
Bva12g01829 1670 SMART PHD_3 1357 1402 IPR001965 -
Bva12g01829 1670 SMART PHD_3 415 483 IPR001965 -
Bva12g01829 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 688 IPR027417 -
Bva12g01829 1670 Pfam Helicase conserved C-terminal domain 1450 1576 IPR001650 -
Bva12g01829 1670 Gene3D - 1417 1643 IPR027417 -
Bva12g01829 1670 CDD DEXQc_SHPRH 290 689 - -
Bva12g01829 1670 MobiDBLite consensus disorder prediction 936 958 - -
Bva12g01829 1670 MobiDBLite consensus disorder prediction 936 953 - -
Bva12g01829 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1341 1416 IPR013083 -
Bva12g01829 1670 Pfam SNF2-related domain 293 786 IPR000330 GO:0005524|GO:0140658
Bva12g01829 1670 Gene3D - 347 398 IPR038718 -
Bva12g01829 1670 SMART ultradead3 286 659 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01829 Bva-Chr12 14889395 14902378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01829 490 784 RAD5 or RAD16-like Gene Family AT5G22750 32.000 1.44e-38 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva12g01829 SNF2_N 3.9e-86 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01829 K15710 - gmx:100776659 2543.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01829 12 14889395 14902378 Bva12g01829 12 14889395 14902378 ECH