Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01827 ATgTTCccctccttctctttcttttcttttctctccgcCCAATTTTTCCCTTCACTGCCGATACAAGGCAGCTGGAGAGATCATTCTGGAGAAACTTTTTTTCGAAGGTGTTCGATGGAGAAAGAGTTGGTCGAATTGTACGAATCCGTGAAGAAGGCGGCGGACGCGGCGAGCTCCGGCCAGAGCGAACACGAAGAAAGTCGGTGCATTGATGCGCTCGAGCAGCTTAAGAAATTCCCAGTGAATTATCAAATTCTGGTCTCCACCCAGGTGGGCAAGCGTCTTCGACATCTCACAAAACatccaaataagaaaattcGGGCCTTTTCTGCTGACTTGATTGAGATATGGAAAGACATAATTATCAAGGAAACaagcaaaaataagaatggCAATTCAAATAATCATGTTGAGTCAGCAAATGCAGAGACAGCTAAAGCTGAGAAAGTTCATAAGACCCCTCAGGTGAAGGTTGAGAAGACTTCAAAGGGTGAAACCGTCAAGGTTGAGAAAATTGACAGGAATGGTACGTCAAACTTATCAAATATGAAGACACAAAATGTGAATGTCAAAATTGAGAAAGCTGATTCTGCGGCACATGTTAAGGTGGAAAAGATAGTTAAGGACGAGAAGCAAGTTTCTGGAGTGAAGAAAACATCATCCAGCCCTGCCGTCTCCGCTCCTCCGAAGCTGAAATCTATGATTAAATCTAATGATGCAATGCGAGACAAGATAAGGGAAATGCTCCATGATGCTTTCTCCCGTATTGCTGGAGAGGCTGACGAAGATATCATGGATCAAGTCAATGCATGTGATCCTATTCGAGTTGCTGTTTCAGTGGAATCTGTATTATTTGAGAAGTGGGGTCCTTCTAATGGGGCTCAAAAGGTTAAGTATAGGTCCTTAATGTTTAACCTTAAGGATCAGAATAACCCAGATTTCCGGAGAAAAGTTCTTTTGGGAGATGTTGAACCAGAGCGGCTGCTCAACATGACCACACAAGAAATGGCTAGTGAGAAAAGGAAGCAAGAGAATGagcaaataaaacagaaaGCTTTATTTGAATGTGAGCGCGGACTGCAACCAAAAGCCACAACTGATCAATTTAAATGTGGCCGATGTGGTCAAAGGAAGTGCACCTATTACCAAATGCAGACCCGCAGTGCTGATGAACCCATGACAACCTATGTTACATGCGTAGTCTGTAACAACCGTTGGAAGTTCTGTTA 1229 0.4076 MFPSFSFFSFLSAQFFPSLPIQGSWRDHSGETFFRRCSMEKELVELYESVKKAADAASSGQSEHEESRCIDALEQLKKFPVNYQILVSTQVGKRLRHLTKHPNKKIRAFSADLIEIWKDIIIKETSKNKNGNSNNHVESANAETAKAEKVHKTPQVKVEKTSKGETVKVEKIDRNGTSNLSNMKTQNVNVKIEKADSAAHVKVEKIVKDEKQVSGVKKTSSSPAVSAPPKLKSMIKSNDAMRDKIREMLHDAFSRIAGEADEDIMDQVNACDPIRVAVSVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGDVEPERLLNMTTQEMASEKRKQENEQIKQKALFECERGLQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01827 409 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 34 135 IPR035441 -
Bva12g01827 409 SMART mid_6 239 347 IPR003618 GO:0006351
Bva12g01827 409 ProSitePatterns Zinc finger TFIIS-type signature. 371 406 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bva12g01827 409 SMART TFS2_5 46 123 IPR003617 GO:0005634
Bva12g01827 409 ProSiteProfiles TFIIS N-terminal domain profile. 48 124 IPR017923 -
Bva12g01827 409 ProSiteProfiles TFIIS central domain profile. 241 364 IPR003618 GO:0006351
Bva12g01827 409 SUPERFAMILY Zinc beta-ribbon 348 407 - -
Bva12g01827 409 CDD Zn-ribbon_TFIIS 362 408 - -
Bva12g01827 409 SMART Cys4_2 369 408 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bva12g01827 409 CDD TFIIS_I 47 121 - -
Bva12g01827 409 Pfam TFIIS helical bundle-like domain 72 121 IPR017923 -
Bva12g01827 409 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 39 409 - -
Bva12g01827 409 TIGRFAM TFSII: transcription elongation factor S-II 56 409 IPR006289 GO:0003676|GO:0005634|GO:0006368
Bva12g01827 409 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 39 409 - -
Bva12g01827 409 Pfam Transcription factor S-II (TFIIS) 369 407 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bva12g01827 409 SUPERFAMILY Elongation factor TFIIS domain 2 227 339 IPR036575 GO:0006351
Bva12g01827 409 MobiDBLite consensus disorder prediction 142 163 - -
Bva12g01827 409 ProSiteProfiles Zinc finger TFIIS-type profile. 367 407 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bva12g01827 409 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 34 137 IPR035441 -
Bva12g01827 409 PIRSF TFIIS 38 409 IPR035100 -
Bva12g01827 409 Gene3D - 214 337 IPR036575 GO:0006351
Bva12g01827 409 Pfam Transcription factor S-II (TFIIS), central domain 238 355 IPR003618 GO:0006351
Bva12g01827 409 Gene3D - 338 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01827 Bva-Chr12 14884425 14887456 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bva12g01827 TFIIS_M 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01827 K03145 - gmx:100811982 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01827 12 14884425 14887456 Bva12g01453 12 12561047 12564045 ECH
Bva12g01827 12 14884425 14887456 Bva12g01827 12 14884425 14887456 ECH