Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01817 ATGCGAGCATTGTTGAACATGAGAACTCTTGTCCGCTTGTTCTTGCTGCTTCTTATAGCTCCGGTCTTCGTCAAATCTGTTAATCCGTCTCTCAACGACGATGTTCTGGGCCTGATTGTGTTCAAAGCTGATATACAAGATTCGAAAGAAAAACTGTCATCTTGGAATGAAGACGATGAAACTCCCTGTTCCTGGACCGGTGTGAAATGTAGCCCCAGATCCAACAGGGTCATTGAGCTTAACCTCGACGGGTTCTCCCTTTCGGGTCGGATAGGTCGAGGTCTCTTCCAGTTGCAGTATCTAAGAAAGCTTTCTCTCGCGAAGAACAATCTCACCGGTGGAATAAGTCCTAACATTGCTAGAATTGATAACCTTCGAGTAATTGACTTGAGTGAGAACAATCTCTCAGGAGAGGTGCCTGACGAATTTTTCCGACAATGCGGGTCTCTGAGAACAGTTTCTTTGCCGAGGAACAATTTTTCCGGGAAGATTCCGTTTAGTTTGAGTTCATGCTCAGCTCTTGCTGCGATTGACTTATCCTTTAACCAGTTTTCAGGTTCTCTTCCTTCTGGGATTTGGACTTTGAGCGGACTGAGGTCGTTGGATTTGTCTGGTAATTCGTTGGAGGGCGAGATTCCAATGGAAATTGAAGGACTGAAGAATTTACGAGCAATTAACTTGGCCAGAAATCAGTTTTCTGGCAAGGTCCCAAATGGGATTGGAAGTTCCTTGCTTTTGAGGTCTATTGATCTCAGCGAGAATTCTCTTTCTGGGAACTTTCCAGATCTCCAGGAGCTTACTTTATGTAATTACCTTAGTTTGCGTGGAAACGCTTTTTCAGGTGAGGTTCCTGCGTGGATTGGGGAAATGAAAAGCCTTGAGACGCTGGACCTCTCTCTGAACAGATTTTCTGGTAAGGTGCCAACTTCTCTTGGAAATCTTCAGTCTTTGAAGACAATGAATTTTTCCGGAAATGGCTTCGTTGGGAATCTGCCAGAGTCTATGATGAATTGCACAAGCCTCTTGGCTTTAGACTTGAGCCAGAATTCACTGTCCGGTGATCTTCCAACGTGGATTTTCAAGTCAGATTTACAGAAGGTTTTGGCCTCAGAAAGTAAATTGACTGCAAGCCTGAAAAACCCGTTAAATTCCTTGGCGGAAGTTGCGGTTCAAAATCTTCAATTCCTGGATTTATCTGAAAATGGATTTTCTGGCGAAATTCCATCTTCTATTGCAGTTTTAAGCAGCTTgcaattcttggatttatcgAAGAACTCTCTAATGGGTCCTATACCAGTTGCTATTGAAGAATTGAAGTCGCTTTATAGTCTTGATTTGAGTGAGAATCAGCTAAATGGAAGCATACCTTTGGAAATAGGAGGAGCAGTGTCTTTGAAGGAACTGAGATTGGAAAAGAACTTCCTAGTTGGGAAAATTCCGACCACAATTGAGAACTGTACTTCATTATCGACTTTGGATCTATCACAAAATAGACTGATTGGCTCAATACCTGCAGCATTTGCAAAGCTTACCAACCTACAAGTTGTGGACTTATCTTTTAACAACCTTACTGGAACCCTTCCCAAGCAATTGGCCAATCTCCCTaaccttctttctttcaatttatctCACAACAACCTCCAGGGTGAACTGCCTGCTGGTGGCTTTTTCAACACTATTGCGCCTTCCTCTGTTTCTGGCAACCCATCTCTTTGTGGTTCTGCAGTCAACAGATCATGTCCTACTGTCCTTCCAAAGCCTATTGTCTTAAATCCTAACACTTCTACTGATTATACATCAGGTTCACTACCTCCAAATGTTGTTGGTCACAAGAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCGGCTGTCATTGTGATTGGTGTCATTGCCATCACTGTTCTCAATCTCCGTGTTCGGTCTGCCACATCTCGATCTGCAGCTGCACTCACATTTTCTGCTGGGGATGAATTCAGCCATTCCCCGACTACAGACGCCAACTCTGGCAAGCTTGTCCTGTTTTCAGGTGAACCTGACTTCAGCACTGGAGCACATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGTGGGTTTGGAGCAGTGTATCGAACAGTTCTTAGAGATGGGCGTTCAGTTGCAATCAAGAAGCTCACTGTCTCAAGTCTTGTCAAGTCCCAGGAAGATTTTGAGAGAGAAGTGAAGAACTTAGGAAAAGTCCAACACCAAAATCTTGTGGCACTTGAAGGTTATTATTGGACTCCGTCACTACAGCTCCTTATCTCTGAGTATGTCTCCGGGGGAAGTCTATACAAGCATCTCCATGAAGGATCAGGTGGGAACTTCCTCTCATGGAATGAGAGGTTTAATGTAATTCTTGGGACAGCAAAAGCCTTAGCTCACTTGCACCACTCAAACATTATTCACTATAACATTAAGTCAACCAATGTCCTCATTGATAGCTATGGTGAACCTAAAGTAGGAGACTATGGCCTTGCAAGGTTATTACCAATGCTCGACCGTTATGTCTTAAGCAGCAAAATTCAAAGTGCCCTTGGCTACATGGCACCAGAATTTGCCTGCAAGACGGTGAAGATAACAGAGAAATGTGATGTATATGGGTTTGgagttttggttttggaggTGGTCACAGGGAAGAGGCCTGTTGAATACATGGAAGATGATGTGGTGGTGCTTTGTGACATGGTCAGAGGAGCTTTGGAAGAAGGCGGGGTGGAGGAATGTATTGATGGAAGATTGCAGGGCAAGTTCCCGGCCGAGGAAGCAATTCCAGTAATGAAGCTAGGTTTGATATGTACTTCTCAAGTGCCATCCAATCGGCCAGACATGGGAGAGGTAGTTAACATATTGGAGCTCATAAGATGCCCTTCAGAAGAACAAGAGGAGTTCGTATG 2927 0.4332 MRALLNMRTLVRLFLLLLIAPVFVKSVNPSLNDDVLGLIVFKADIQDSKEKLSSWNEDDETPCSWTGVKCSPRSNRVIELNLDGFSLSGRIGRGLFQLQYLRKLSLAKNNLTGGISPNIARIDNLRVIDLSENNLSGEVPDEFFRQCGSLRTVSLPRNNFSGKIPFSLSSCSALAAIDLSFNQFSGSLPSGIWTLSGLRSLDLSGNSLEGEIPMEIEGLKNLRAINLARNQFSGKVPNGIGSSLLLRSIDLSENSLSGNFPDLQELTLCNYLSLRGNAFSGEVPAWIGEMKSLETLDLSLNRFSGKVPTSLGNLQSLKTMNFSGNGFVGNLPESMMNCTSLLALDLSQNSLSGDLPTWIFKSDLQKVLASESKLTASLKNPLNSLAEVAVQNLQFLDLSENGFSGEIPSSIAVLSSLQFLDLSKNSLMGPIPVAIEELKSLYSLDLSENQLNGSIPLEIGGAVSLKELRLEKNFLVGKIPTTIENCTSLSTLDLSQNRLIGSIPAAFAKLTNLQVVDLSFNNLTGTLPKQLANLPNLLSFNLSHNNLQGELPAGGFFNTIAPSSVSGNPSLCGSAVNRSCPTVLPKPIVLNPNTSTDYTSGSLPPNVVGHKRIILSISALIAIGAAAVIVIGVIAITVLNLRVRSATSRSAAALTFSAGDEFSHSPTTDANSGKLVLFSGEPDFSTGAHALLNKDCELGRGGFGAVYRTVLRDGRSVAIKKLTVSSLVKSQEDFEREVKNLGKVQHQNLVALEGYYWTPSLQLLISEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLIDSYGEPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGGVEECIDGRLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEEQEEFV 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01817 975 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515
Bva12g01817 975 CDD STKc_IRAK 698 964 - -
Bva12g01817 975 SMART LRR_typ_2 195 218 IPR003591 -
Bva12g01817 975 SMART LRR_typ_2 290 314 IPR003591 -
Bva12g01817 975 SMART LRR_typ_2 486 509 IPR003591 -
Bva12g01817 975 SMART LRR_typ_2 534 558 IPR003591 -
Bva12g01817 975 SMART LRR_typ_2 438 462 IPR003591 -
Bva12g01817 975 SMART LRR_typ_2 122 146 IPR003591 -
Bva12g01817 975 SMART LRR_typ_2 510 533 IPR003591 -
Bva12g01817 975 SMART LRR_typ_2 338 362 IPR003591 -
Bva12g01817 975 SMART LRR_typ_2 219 243 IPR003591 -
Bva12g01817 975 Gene3D Phosphorylase Kinase; domain 1 686 768 - -
Bva12g01817 975 SUPERFAMILY Protein kinase-like (PK-like) 695 967 IPR011009 -
Bva12g01817 975 Pfam Leucine rich repeat 488 547 IPR001611 GO:0005515
Bva12g01817 975 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Bva12g01817 975 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 973 - -
Bva12g01817 975 Pfam Protein tyrosine and serine/threonine kinase 694 959 IPR001245 GO:0004672|GO:0006468
Bva12g01817 975 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Bva12g01817 975 SUPERFAMILY RNI-like 271 560 - -
Bva12g01817 975 Gene3D Transferase(Phosphotransferase) domain 1 769 974 - -
Bva12g01817 975 Gene3D Ribonuclease Inhibitor 32 308 IPR032675 -
Bva12g01817 975 Gene3D Ribonuclease Inhibitor 309 584 IPR032675 -
Bva12g01817 975 PRINTS Leucine-rich repeat signature 198 211 - -
Bva12g01817 975 PRINTS Leucine-rich repeat signature 414 427 - -
Bva12g01817 975 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Bva12g01817 975 SUPERFAMILY L domain-like 47 374 - -
Bva12g01817 975 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 10 973 - -
Bva12g01817 975 ProSiteProfiles Protein kinase domain profile. 692 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01817 Bva-Chr12 14835464 14840009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01817 13 974 Receptor kinase-like Gene Family AT3G56370 69.700 0.0 1309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Bva12g01817 PK_Tyr_Ser-Thr 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01817 - - gmx:100791629 1489.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01817 12 14835464 14840009 Bva12g01817 12 14835464 14840009 ECH