Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01816 ATGTCGTCGGAGGAAATCGGTCTGGTTCCTGACCAGAGGATCCAGAACAGTCTTAGCTCACCCCTTGTGTTTCAAGATGACACCTTGCGCTTCAATTGCGGTGCTCCCCAGCGTCGGGTTGGAGACCCGGGTCCGAAAACGAGGGAGCTTAGCGGTTTCATCGATGAAAAAATGTTTGCTTTAGAGCGGGACCGGTTTTTCACATCTCCTGCCGCGGATTTCCGGCGGAACGTTTATGGGGACTGCTCGGACCGGCGGGACCCACCAGATACACGGAATTGGAATGGGAACGGTAGCACCACAACTCCTAGCGGTGATGAATCGGATGGCGATGATGATGAAGACGAGGATGAAGATGACGATGACGATGACGTTGAAGGTGACGCTGAAGTAGAGGAACTGGTTGGTGTTGATGACGGGAACAAGAGGAATTCCAACCCAATCAATGATATTAACAGCAGCAACAGCAATGGCAGTAACTTGGCTAGTGTTGCAGATAGAATGTCAAATGGGAAAGCTCAGCACCATTCCTATGGGTCCGGTAGAGAGGTGTTGAAGGATGGTAACCTTGGCCAATTGGTGCATAATCGGAGGGCAGGTACGAATGTTGATCATCAGCAAGAAAGACTTGGTAAATCCCAGAATGCCGTCACGATTGCTGAAACTGACTATGAGGAGTATTATTCAAACTATCTTCAAGGCATGGAGGGGTCAGCTTCTATGCAAAAAGCTATTGTGGAGGAGAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTTATTCAAGCGAGTCAGGGGAGTCACTGAGAGCAATTCTTTCAGATCCTGTTACGGGAGCAATAATGGATGATGCGGTGATATTGCCTTGTGGACATTCTTTTGGTGGAGGGGGAATAGAGCACGTTATTAGAATGAAATCTTGCTGCACTTGTTCTCAACCTGTATCTGAGGAATCCATCTCTCCAAATCTATCACTTCGAGCTGCTGTGCAAGCATTCTGCCGTGAAGAGGAGTCACTGTTTTACCGATCatcgaaaaaaagaagagacagATTTGACCAGGGTGGTTATGGTGATTCAGCTGTTATGGAACCATCAAGGGGTAGAGGTGTTCAGTTTCCCTTTGCAGTGATGGACCGGGTTATCATAAAGGGGAACAAGAGGACACCACAGCGCTTTGTTGGAAGGGAAGCTATTGTGACAACACAATGCTTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCGGAGAGCGTAAAATTGCAGTATCGCTCTCTTGCTAAGGTTTCAGATGACCCTTCAAAACCTGCCTCCGCCAAGATTGGATCTGATTGGCTTTA 1340 0.4716 MSSEEIGLVPDQRIQNSLSSPLVFQDDTLRFNCGAPQRRVGDPGPKTRELSGFIDEKMFALERDRFFTSPAADFRRNVYGDCSDRRDPPDTRNWNGNGSTTTPSGDESDGDDDEDEDEDDDDDDVEGDAEVEELVGVDDGNKRNSNPINDINSSNSNGSNLASVADRMSNGKAQHHSYGSGREVLKDGNLGQLVHNRRAGTNVDHQQERLGKSQNAVTIAETDYEEYYSNYLQGMEGSASMQKAIVEENGCGFSGRKDVYSSESGESLRAILSDPVTGAIMDDAVILPCGHSFGGGGIEHVIRMKSCCTCSQPVSEESISPNLSLRAAVQAFCREEESLFYRSSKKRRDRFDQGGYGDSAVMEPSRGRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPASAKIGSDWL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01816 446 Pfam U-box domain 273 337 IPR003613 GO:0004842|GO:0016567
Bva12g01816 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 45 445 - -
Bva12g01816 446 MobiDBLite consensus disorder prediction 106 134 - -
Bva12g01816 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 337 IPR013083 -
Bva12g01816 446 MobiDBLite consensus disorder prediction 142 167 - -
Bva12g01816 446 ProSiteProfiles U-box domain profile. 267 339 IPR003613 GO:0004842|GO:0016567
Bva12g01816 446 SUPERFAMILY RING/U-box 266 337 - -
Bva12g01816 446 MobiDBLite consensus disorder prediction 78 183 - -
Bva12g01816 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 45 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01816 Bva-Chr12 14827208 14831577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01816 213 446 Plant U-box Gene Family AT5G05230 60.331 6.29e-92 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01816 - - adu:107470194 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01816 12 14827208 14831577 Bva12g01816 12 14827208 14831577 ECH