Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01812 atgggTGATCTTCAATATCGACCTCACCGCCTTCTGCTTGACACAGATTCAACCTCAATCCCTACAGGTAATGCAAATAGAACAAGTAGGTTTACAAGTGAGGCCAATTTTGACACCAATATGGTGATAATCTTAGCAGCTTTGCTTTGTGCATTGATATGTGCGCTGGGGCTAAATTCAATTGTGAGATGTGCTCTAAGATGCAGCCGTAGGTTTGCTTTTGAGACAGCAGACGAGGTTGCTGCACGTTTAGCTGCCAAAGGCCTGAAGAAGAGTGCATTGCGTCAGATCCCTATAGCTGTTTATGGTTCCCCAGGTACTAATTTTCCAGCCACAGAATGTCCTATTTGCCTTGGAGAGTTTTTGGATGGGGAGAAAGTGAGAGTCCTACCAAAATGCAACCATGGATTCCATGTGAGGTGCATAGACACATGGCTTCTCTCACACTCGTCTTGTCCAACTTGTAGACACTGTTTGCTTGAACATCCATCTACTTCTGAAGCAGCACTTGCAGCAACTGCACCCATAACTACTGCAGAAACTGGAATCAGGCATCACGTAGAAAATACCTCAGGAGGACATGAATCTGAAGCTGGATCTGCAGCTGTGGAAGAGGTTTA 620 0.4484 MGDLQYRPHRLLLDTDSTSIPTGNANRTSRFTSEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETADEVAARLAAKGLKKSALRQIPIAVYGSPGTNFPATECPICLGEFLDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRHCLLEHPSTSEAALAATAPITTAETGIRHHVENTSGGHESEAGSAAVEEV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01812 206 PANTHER RING-H2 FINGER PROTEIN ATL74 9 172 - -
Bva12g01812 206 Pfam Ring finger domain 113 156 IPR001841 -
Bva12g01812 206 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 9 172 - -
Bva12g01812 206 SMART ring_2 114 155 IPR001841 -
Bva12g01812 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
Bva12g01812 206 SUPERFAMILY RING/U-box 107 163 - -
Bva12g01812 206 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Bva12g01812 206 CDD RING-H2_PA-TM-RING 113 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01812 Bva-Chr12 14812880 14814787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01812 10 164 C3H Transcription Factor Family AT3G10910 61.212 8.27e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01812 K19040 - vvi:100243283 264.618