Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01810 ATGGGCATGTGCACTTGGCAAGTGTCATTAATTCTACCCTGTTCGGTGCAGCAACCATTGCCCTACACACAGCCCACCAAGTTGGACGTATCTAAAGGCACCTATGGAGACGGATGGCAATCTGGGCATGCCACATTTTATGGTGGCGGAGATGCATCGGGCACAATGGGGGGAGCTTGTGGGTATGGCAACTTGTACAGCCAAGGATATGGGACTAACACCGCAGCACTCAGCACTGCTCTATTCAACAATGGCTTGAGCTGCGGGTCCTGCTACGAGATGCAATGTGACAGAAACAGTGACCCCAGATGGTGCCTCCCTGGTTCCATCATTGTTACTGCCACAAACTTCTGCCCCCCAAACTTTGCCTTGTCCAATGACAATGGTGGCTGGTGCAACCCTCCTCTGCAGCACTTTGATCTTGCTGAGCCTGCTTTCCTGCAAATTGCTCAATACAAAGCTGGAATTGTTCCCATTTCCTTCAGAAGAGTCCCTTGtgtaaagaaaagaggaatCAGATTCACCATCAATGGCCACTCTTACTTCAACTTGGTTCTGATCACCAATGTTGCTGGAGCTGGAGATGCCCACTCTGTGTCAATCAAGGGGTCCAAGACTGGGTGGCAGCAAATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAATTCCTACCTCAATGGCCAGAGCCTGTCCTTCCAAGTCACAGCCAGCGATGGCAGAACTATCACTAGCTACGATGTTGCACCTTCCAATTGGCAATTTGGTCAGACATACACTGGGGGGCAGTTCTA 791 0.5006 MAIAAFSAISLIFFLLNLEGTYGDGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMQCDRNSDPRWCLPGSIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPISFRRVPCVKKRGIRFTINGHSYFNLVLITNVAGAGDAHSVSIKGSKTGWQQMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTITSYDVAPSNWQFGQTYTGGQF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01810 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Bva12g01810 250 PANTHER EXPANSIN 5 250 - -
Bva12g01810 250 SUPERFAMILY Barwin-like endoglucanases 25 176 IPR036908 -
Bva12g01810 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Bva12g01810 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 158 IPR007112 -
Bva12g01810 250 SMART dpbb_1 61 148 IPR007112 -
Bva12g01810 250 Gene3D - 155 250 IPR036749 -
Bva12g01810 250 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Bva12g01810 250 Pfam Lytic transglycolase 61 147 IPR009009 -
Bva12g01810 250 PANTHER EXPANSIN-A15 5 250 IPR002963 GO:0009664
Bva12g01810 250 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Bva12g01810 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Bva12g01810 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Bva12g01810 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Bva12g01810 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Bva12g01810 250 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Bva12g01810 250 Gene3D - 15 153 IPR036908 -
Bva12g01810 250 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01810 Bva-Chr12 14802815 14804276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01810 6 250 Expansin Gene Family AT2G40610 82.258 4.67e-148 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01810 - K20628 rcu:8259547 459.144