Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01792 ATGGGTGCTGCTAGTAACATCTGCTTCTCTTCACTGTTCACAACTTCTCTCCAGATTGATGTGCTTTCGAAGCagacaaagaagaaatggGCAGGCCATTTCATGGTTCCGATTCAGAACAACTCTATTAGGTTGGGTGGAATCTATTGTAAACTATCAGATAGTGGAATCGAGGAGAATCCCAGAAGCAAGAGGGCCACTAATTCCAAAAATAGAATGGAGGAGTACAACACAGCTATGAAGAGGATGATGAGGAACCCTTATGAATATCACCACGAACTGGGTATGAATTACACACTTATAACTGACAATTTGATTGTGGGCTCCCAGCCACAGAAACCTGAAGACATAGATCACCTTAAGAAGGAAGAGGGTGTAGCTTACATTCTAAACTTGCAACAAGATAAAGATGTGGAGTATTGGGGAATAGACTTGCAGTCAATAATAAGAACATGTCATAAGCTTGGCATCCGTCACATGAGGAGGCCTgCAAAGGACTTCGATCCAAACTCCTTGCGAAATGAGCTACCTAAAGCAGTTTCATCATTGGAATGGGCCATTTCCAAGGGAAAAGGAAGAGTTTATGTGCATTGCACGGCTGGACTTGGAAGAGCTCCTGCAGTGGCAATTGCTTATTTGTTCTGGTTTTGTGGCATGAACCTAAACACAGCATATGATATGTTAACTTCGAAGAGACCTTGTGGACCCAATAAAAGAGCAATACGTGGAGCTACTTACGATTTGGCTAAGAATGATCCATGGAAGGAATCATTTGAGAGTCTTTCAGAACATGCGTTTGAGGATATAGCAGACTGGGAGAGGAACTTAATTCAAAATCGCGTCCGTTCCCTCCGTGGGACATG 863 0.4218 MGAASNICFSSLFTTSLQIDVLSKQTKKKWAGHFMVPIQNNSIRLGGIYCKLSDSGIEENPRSKRATNSKNRMEEYNTAMKRMMRNPYEYHHELGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDKDVEYWGIDLQSIIRTCHKLGIRHMRRPAKDFDPNSLRNELPKAVSSLEWAISKGKGRVYVHCTAGLGRAPAVAIAYLFWFCGMNLNTAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKESFESLSEHAFEDIADWERNLIQNRVRSLRGT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01792 287 CDD DSP_laforin-like 96 243 IPR045204 GO:0019203|GO:0046838
Bva12g01792 287 Gene3D Protein tyrosine phosphatase superfamily 80 287 IPR029021 -
Bva12g01792 287 Pfam Dual specificity phosphatase, catalytic domain 118 237 IPR000340 GO:0008138|GO:0016311
Bva12g01792 287 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 233 IPR000387 GO:0016311|GO:0016791
Bva12g01792 287 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 239 IPR029021 -
Bva12g01792 287 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 254 IPR020422 GO:0006470|GO:0008138
Bva12g01792 287 Coils Coil 66 86 - -
Bva12g01792 287 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 3 287 - -
Bva12g01792 287 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 287 - -
Bva12g01792 287 SMART dsp_5 97 247 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01792 Bva-Chr12 14724686 14726800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01792 45 287 Protein tyrosine phosphatase (PTP) family AT3G10940 78.279 1.65e-146 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01792 - - gmx:100805592 459.529