Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01787 ATGTCCAGAGAAAGGGAGAGATTTGATCATGAGATAGGAAAGAAGATCAAGAGGGAAGGAGATGTTTCTTCTCCAATGGGAAGGAGACACATGTTGGGTCCTCCTGGAACCCTAAATACCATTACCCCTTGTGCAGCATGTAAGCTCTTGAGAAGAAGATGTGCCCAAGAATGCCCCTTTTCTCCCTATTTCTCTCCTCATGAACCACAAAAGTTTGCTTCTGTCCACAAAGTATTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAGGTGCCGGAGAGTCAAAGAGCCGATGCAGCAAACAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGACCCAGTTTATGGATGCATGGGTGCAATCTCTGCTCTGCAACAGCAAGTTCAAACTTTACAAGCTGAACTTCATGCAGTAACGGCAGAAATACTTAAATACAAACTTAGGGAAGCTAACATGATACCCTCCTCTCATGTTACTATTCTCCCTTCTTCTGGGGCTGTTTCCATTGCTGCTCCGCCGCCACCATCACAACCTCCTCTCCCTCCTACTTCTTCTACTTCTTCCATTTACTCCCAACAGAGGCCTCCCACCAATTATAGCACAATTTCAAGCGATCATAATATTTCctattttggtta 641 0.4446 MSRERERFDHEIGKKIKREGDVSSPMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQTLQAELHAVTAEILKYKLREANMIPSSHVTILPSSGAVSIAAPPPPSQPPLPPTSSTSSIYSQQRPPTNYSTISSDHNISYFG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01787 213 MobiDBLite consensus disorder prediction 184 213 - -
Bva12g01787 213 MobiDBLite consensus disorder prediction 170 213 - -
Bva12g01787 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 27 213 - -
Bva12g01787 213 Coils Coil 122 149 - -
Bva12g01787 213 Pfam Lateral organ boundaries (LOB) domain 43 139 IPR004883 -
Bva12g01787 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 27 213 - -
Bva12g01787 213 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01787 Bva-Chr12 14692941 14694561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01787 28 213 AS2 family AT2G40470 70.352 8.45e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva12g01787 LOB 5.5e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01787 12 14692941 14694561 Bva12g01418 12 12408546 12409908 ECH
Bva12g01787 12 14692941 14694561 Bva12g01787 12 14692941 14694561 ECH