Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01780 ATGGTTTCTAGAGAGCACAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTATTACTAATTCTCATGCTCTAAGCAAAACCTCGATCATAATCGATGCATCAAAGTATATTGAAGAGCTAAAGCAAAAAGTGGAAAGACTGAATCAGGACATAGCCACGGGACAAACTTCAGCTGATCAAAATTCTTTGCCAATGGTAAAGGTGGAAACCTTAGAAAAGGGATTTCTCATAAATGTTTTTTCAGCAAGGAGTTGCCCAGGTGTGCTTGTTTCCATATTGGAGGCCTTCGAAGAGATGGGTCTTAATGTGCTGGAAGCTAGGGTTTCTTGCACAGACACCTTTCGATTTCAAGCAGTTGGAGGAGAgAATGAAGAAGGCGAGAGTATCGATGCACAAGCTGTAAAGCAAGCAGTGGGACAAGCTATAAAGAATTGGAGAGAGAGTACTGATCATCAGCAGTA 470 0.4213 MVSREHKRAALHEKLQLLRSITNSHALSKTSIIIDASKYIEELKQKVERLNQDIATGQTSADQNSLPMVKVETLEKGFLINVFSARSCPGVLVSILEAFEEMGLNVLEARVSCTDTFRFQAVGGENEEGESIDAQAVKQAVGQAIKNWRESTDHQQ 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01780 156 CDD ACT_UUR-ACR-like 89 145 - -
Bva12g01780 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 60 IPR036638 GO:0046983
Bva12g01780 156 Coils Coil 33 60 - -
Bva12g01780 156 ProSiteProfiles ACT domain profile. 80 151 IPR002912 -
Bva12g01780 156 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 153 - -
Bva12g01780 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01780 Bva-Chr12 14654780 14658939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01780 11 141 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 31.250 2.79e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01780 - - tcc:18600910 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01780 12 14654780 14658939 Bva12g01412 12 12369604 12371461 ECH
Bva02g00474 02 6192749 6194466 Bva12g01780 12 14654780 14658939 ECH
Bva01g00167 01 1360103 1361565 Bva12g01780 12 14654780 14658939 ECH
Bva12g01780 12 14654780 14658939 Bva12g01780 12 14654780 14658939 ECH