Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01747 ATGGGTGCCTATGATCAAGGTTCTAACGTCACTTCTTTGGGGAAGAAGAGAAGTCGGAGTAGACGGGATGGATCTAATGTTGCTGAGACTCTTGCAAAGTGGAAAGAGTATAACAATCAACTCGAGTCTTCCACCAATGAGAGTAAACCAACCCGCAAAGTCCCTGCTAAGGGTTCAAAGAAAGGATGTATGAAGGGTAAAGGAGGACCTGAAAACTCCCGATGCAGCTTTAGAGGTGTTAGGCAAAGGACATGGGGAAAGTGGGTTGCTGAAATTCGGGAGCCAAACAGAGGAAGTAGGCTTTGGTTGGGCACCTTTTCTAATGCTATTGAAGCTGCCCTGGCATATGATGAAGCTGCAAGGGCCATGTATGGTCCTTGTGCCCGTCTCAATTTTCCTCAAGTTTCAGACTATAGCTCTTGCAAGGAATCATTGAACGATTGTTCCCCTGCTACAACTCTGTCAACTTCAGCGGCAACTTCTGCAGGTTCTGAGACAACTACCGTATCAAACCAATCTGAAGTCTATGCAGCTGAGGGTGTTAAGTGTGAAAGTGAAACTATAGATGCCAACAATAGAGATGGTGCCCATCATGAGGCTGGTACACCAATTAGCAGAGTGAAGGAAGAGCCAAAGGATGAATCTGCTGATAACACAGGAATTGACCACCGGTATAGTAAAGATTTGAGACAAGAAGCACAAGCAATCAAAGAGGTTGCAGAGGATGAACATCAAGATCCAATGGACTGTTCTTGGATGGATAATGATCTCTTGCAGGGTTTTTCTATGGATGAGATGTTTGATGTGGATGAGCTTTTGGGGAAGCTAGAGAATCCAATTGGTGAACCTCGGATGATGCATGGTCCAATTGATTTTTCTGTTGATCGGAATCTTCAAAGTGAGATACCATCAAGCTTGTCCTATCAGTTGCAAAATCCAGACGCCAAGTTGCTTGGAAGTCTGCACCATATGGAACAGACACCCTCAGGTGTTGATTatggttttaatttcttaaaaacagAAGAGCCAGAGGATAACAATCATACAGGAGAAGAGCAATATCTTGATTTTGGATTGTCTGATCTGTG 1088 0.4347 MGAYDQGSNVTSLGKKRSRSRRDGSNVAETLAKWKEYNNQLESSTNESKPTRKVPAKGSKKGCMKGKGGPENSRCSFRGVRQRTWGKWVAEIREPNRGSRLWLGTFSNAIEAALAYDEAARAMYGPCARLNFPQVSDYSSCKESLNDCSPATTLSTSAATSAGSETTTVSNQSEVYAAEGVKCESETIDANNRDGAHHEAGTPISRVKEEPKDESADNTGIDHRYSKDLRQEAQAIKEVAEDEHQDPMDCSWMDNDLLQGFSMDEMFDVDELLGKLENPIGEPRMMHGPIDFSVDRNLQSEIPSSLSYQLQNPDAKLLGSLHHMEQTPSGVDYGFNFLKTEEPEDNNHTGEEQYLDFGLSDL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01747 362 CDD AP2 75 135 IPR001471 GO:0003700|GO:0006355
Bva12g01747 362 Gene3D AP2/ERF domain 76 135 IPR036955 GO:0003700|GO:0006355
Bva12g01747 362 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Bva12g01747 362 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Bva12g01747 362 MobiDBLite consensus disorder prediction 1 74 - -
Bva12g01747 362 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Bva12g01747 362 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Bva12g01747 362 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 345 - -
Bva12g01747 362 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 345 - -
Bva12g01747 362 MobiDBLite consensus disorder prediction 191 221 - -
Bva12g01747 362 MobiDBLite consensus disorder prediction 32 52 - -
Bva12g01747 362 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Bva12g01747 362 SUPERFAMILY DNA-binding domain 77 133 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01747 Bva-Chr12 14521825 14524170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01747 10 362 AP2-EREBP Transcription Factor Family AT2G40340 38.315 1.98e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g01747 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01747 - K09286 gmx:100800134 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01747 12 14521825 14524170 Bva12g01747 12 14521825 14524170 ECH