LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g01738	ATGGATTCCGACTTCCCCAACAAAGCGTTAACGAGCACACGTTTCTCTGAGTTGAACCCGCCACTATCCGTACCGGTTCTCAAAGCCCTATCAGAGTTTGGATTCGAGTTCTGCACACCGGTTCAAGCTGCCACAATACCTCTGCTATGCAGTTTCAAGGACGTCGCCGTCGACGCTGCCACCGGTTCGGGAAAGACACTGGCGTTTGTTGTTCCACTCGTTGAGATCCTACGCCGGTCCTCTTCTCATACTAAACCTCACCAGGTACTTGGAATAATTATATCTCCTACGAGGGAATTGTCATCCCAAATATACCATGTTGCTCAACCTTTCATTTCGACATTATCAAATATGACATCCATGCTTCTCATTGGTGGAGTAGAAATCAAAGCAGAcatgaagaaaatagaggAAGAGGGGGCAAATATATTGATCGGAACACCTGGGCGGCTATATGATATAATGGATCGGATGGatatattagattttaaaaatctgGAGattttgattttagacGAGGCTGATAGACTTTTAGATATGGGATTCCAGAAGCAGATAAGCTCAATTATATCCCGCTTACCAAAGCTTCGTAGAACTGGTCTTTTCTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAAGCAGGATTGAGGAACCCTGTGAGGGTTGAAGTTCGGGCAGAAGCAAAACCAACAAATGATGCTGTAACATCACAACAACTAGCCTCTTCGAAGACACCTTCAGGACTTCACATTGAGTACATGGAATGCGAGGCAGACAAGAAACCATCTCAGCTTGTAGATATACTTATTAGGAACCGctcaagaaaaattataatATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTCCTTACACGCCTTTCTGTTTTAAAGGGTTTCTCTTTGATTCCACTTCATGGGAAGATGAAGCAGACTGTCAGGGAGAAAGCACTTACTTCATTCACATCTCTTTCAAATGGAATTCTTCTTTGTACCGATGTCGCTGCTCGTGGACTTGACATACCAGGTGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTCATACACAGAGTTGGCCGAACTGCTCGGCTGGGTAAACAAGGACACGCTATTGTCTTTTTATTGCCAAAGGAGGAATCTTATGTAGAATTCCTGCGCATAAGAAGGGTCCCTCTTCAAGAGAGAAGATGCTCTGATGATGCATCTGATGTTGTTCCTCAGATTCGTGATGCTGCAAGAAAGGATCGAGATGTCATGGAGAAAGGACTCAGGGCATTTGTTTCTTATGTCCGTGCATATAAAGAGCACCACTGCTCGTATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCTATGGGATATGGATTATTGCAGCTTCCTTCAATGCCAGAGGTAAAAAACCAGTCGCTCTCTACTGAGGGGTTTGTACCTGTTGAAGATATCAATTTGGAGGACATTAAGTACAgGGATAAATCTCGTgagaaacaaaggaagaagaacCTGCAAGCTAAGAAAGAATCCAAAGAGAAAGAGGCAAAACCTCAAAAACCCAGCAAAAACCCAATTGCAGCTGTCACTAGGAAAAAAACAGCCAAACAGAGACGTGCTCAGCAGACAGTTGAAGATGAGGATGAGTTAATGCGAGAATACCGTttgttgaagaaattgaagaaaggaACTATTGATGAAAGTGAATATGCAAAATTAACAGGCACTGAGGAACTACTTTG	1766	0.4077	MDSDFPNKALTSTRFSELNPPLSVPVLKALSEFGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSHTKPHQVLGIIISPTRELSSQIYHVAQPFISTLSNMTSMLLIGGVEIKADMKKIEEEGANILIGTPGRLYDIMDRMDILDFKNLEILILDEADRLLDMGFQKQISSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEAKPTNDAVTSQQLASSKTPSGLHIEYMECEADKKPSQLVDILIRNRSRKIIIYFMTCACVDYWGVVLTRLSVLKGFSLIPLHGKMKQTVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLRIRRVPLQERRCSDDASDVVPQIRDAARKDRDVMEKGLRAFVSYVRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKNQSLSTEGFVPVEDINLEDIKYRDKSREKQRKKNLQAKKESKEKEAKPQKPSKNPIAAVTRKKTAKQRRAQQTVEDEDELMREYRLLKKLKKGTIDESEYAKLTGTEELL	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g01738	588	Coils	Coil	503	525	-	-
	Bva12g01738	588	MobiDBLite	consensus disorder prediction	501	556	-	-
	Bva12g01738	588	Pfam	Helicase conserved C-terminal domain	263	375	IPR001650	-
	Bva12g01738	588	PANTHER	ATP-DEPENDENT RNA HELICASE DDX55	25	586	-	-
	Bva12g01738	588	CDD	SF2_C_DEAD	254	384	-	-
	Bva12g01738	588	SMART	DUF4217_3	413	476	IPR025313	-
	Bva12g01738	588	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	170	178	IPR000629	-
	Bva12g01738	588	SMART	helicmild6	290	375	IPR001650	-
	Bva12g01738	588	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	266	422	IPR001650	-
	Bva12g01738	588	Gene3D	-	3	227	IPR027417	-
	Bva12g01738	588	Pfam	DEAD/DEAH box helicase	39	213	IPR011545	GO:0003676\|GO:0005524
	Bva12g01738	588	Pfam	Domain of unknown function (DUF4217)	416	474	IPR025313	-
	Bva12g01738	588	CDD	DEADc_DDX55	26	224	-	-
	Bva12g01738	588	SMART	ultradead3	34	240	IPR014001	-
	Bva12g01738	588	MobiDBLite	consensus disorder prediction	501	528	-	-
	Bva12g01738	588	PANTHER	RNA HELICASE	25	586	-	-
	Bva12g01738	588	Gene3D	-	253	485	IPR027417	-
	Bva12g01738	588	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	46	224	IPR014001	-
	Bva12g01738	588	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	90	394	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g01738	Bva-Chr12	14481872	14486874	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g01738	26	384	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.471	1.41e-43	159

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva12g01738	12	14481872	14486874	Bva12g01738	12	14481872	14486874	ECH