Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01736 ATGGGTGGGAATTCCCCATGCGCTTCATGCAAGTTACTACGACGCCGTTGTGCCAAGGACTGCATCTTCGCCCCGTATTTTCCCTCCGATGACCCCCAAAAGTTTGCCATAGTTCACAAGGTTTTCGGTGCTAGCAACGTTAGCAAAATGTTGCAGGAACTTCTGGTTCACCAGAGAGCAGACGCAGTGAGCAGTTTAGTGTATGAAGCAAATGCTAGAGTCCGAGACCCGGTTTACGGCTGTGTTGGGGCCATCTCTTACCTGCAAAACCAGGTTTCAGAGCTTCAAATGCAGCTAGCAGTGGCTCAAGCAGAGATACTCTGCGTCCAGATGCAGCATGAGCCAGCAATGCCAAACCCAGAACTGATTGAGAGTATTGACCCAGATCAGAAATCTTACTTTAATCTCCAAAATGACCTTCCCCagttcttcaatttttcctcTTCTAGCAATGTAATCCATGACTCTCTCAAGAGAGAGACCATTTTTGGACACGACATggtttctta 509 0.4558 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELLVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCVQMQHEPAMPNPELIESIDPDQKSYFNLQNDLPQFFNFSSSSNVIHDSLKRETIFGHDMVS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01736 169 Coils Coil 85 105 - -
Bva12g01736 169 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Bva12g01736 169 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bva12g01736 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 162 - -
Bva12g01736 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01736 Bva-Chr12 14470707 14471528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01736 3 132 AS2 family AT2G30130 82.308 5.35e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva12g01736 LOB 5.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01736 - - gmx:121173085 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01736 12 14470707 14471528 Bva12g01388 12 12245883 12246479 ECH
Bva12g01736 12 14470707 14471528 Bva12g01736 12 14470707 14471528 ECH