Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01721 ATGGAAGAAGCTCTTTCTGCGATGATCTCCTCAGGCTTTTCACCAACTGGGTCTTTGATGGATTCATTGATTCATATCTCCAATGAAGTTGCCTCCATTGAAAAGTTCCCTTGTGCTCACGCTAAGAATGTTTCATCCATGATAAGGAGGGTCAAGCTTCTATCTTCTTTGTTTGGTGATATTCAAGAAACAGATACACCACTTCCTCCTTCTTCAATCCTTTGTTTCACAGAGCTCTTCTCTGTGATTAGAAGAGTGAAGCTTTTGATCCAAGAGTGCAAGGATGGCAGCTCCCTATGGGGTCTGATCCAGTTAGAATTCATTTCCAACAAATTCTATGTGCTGGTCAAAGAGATGGGAAGTGCTCTTAATATCCTTCCTCTGAGCTTGCTTAACATAACAGCAGATGCGAGAGAGCAAGTGGAGCTTCTGCACAGACAGACAAAAAGGGTTGAGTTGTTTATTGACCCTCGAGAGCTTCAAAGAAGAGAACAGCTTCTACAAGAAATGGCCAACAAGGGCTATGTTGACTTTGGGAAAGTGCAACAAATATTAAGCAGCATCGGTGTGAGAACTCCTTCGGATTATTATGGAGAAGTATCAAAGCTAGAGGCTGAAGCTCAGAAACAAGCAGGCACGGGGGGACTAATCGTTGTCTCCCATATAAACAATCTTATAACTCTGGTTACATACTCCATATCCACGATATTCAGAGatgcagaaaatgaaagagaaaaagaagaatgtaaGCCATTATCTGCATTTCTGTATAAAAACAATGAtacttcttcatcttctcagCCTGTGATGCCTAATATTCCTGACGAATTTCGTTGCCCAATTTCACTCGACTTAATGAAAGATCCAGTGATTGTATCATCTGGGCACACTTATGATCGTATTTCCATTGCACAGTGGATCAACTCAGGTCATCACACTTGTCCCAAAAGTGGACAAAGGTTAATTCACACAGCTCTAATACCCAACTATGCATTGAAGAGTCTTGTCCAGCAGTGGTGCCATGAAAATAACGTCCCAGTCAATGAGCCTACGATATCGTTTTCCTCAGCCTCCGAGGGAAACAACAGCAAGAATAATTTGTGTGAGAAAGCTGTTGATCATATTTCTGCAAATAAAGCTGCTGCAGATGCTGTGAAAATGACTGCAGAGTTCCTGGTTGGGAAATTAGCAACCGGGTCACCAGATATCCAGAGGCAGGCTGCATATGAACTGAGATTACTAGCAAAAACAGGTATGAATAATAGAAGAATTATCGCTGAGGCAGGAGCAATTCCTTTTCTAACAACATTACTTGGTTCCGATGATCCAAGAATCCAAGAACACGCGGTCACGGCCTTCTTTAACCTTTCCATCTTTGATAACAACAAGCTTCTGATCATGGCATCCGGAGCAGTTGACAACATAGTGGAAGTACTTGAATTGGGAAAAACGATGGAGGCAAGAGAAAATGCAGCAGCGGCAATCTTTAGCCTAACTATGGTAGATGACTTTAAAGTAACAATCGGAGCTCGTCCAAGGGCCATACCTGCCGTAGTTGGACTACTAAGAGAAGGCACATCTATTGGAAAAAGAGATGCTGCAGCTGCACTTTTCAATCTCGCAGTTTACAATCCAAACAaggtaaatattatttatgctGGGGCAATTCCTGTGCTTATAGACTTGCTCATGGATGATAGGGCTGGCATAACAGATGATGCCCTGGCAGTGCTTGCTTTGCTTTTGGGTTGCTCACAAGGGCTGGAACAAATAAAGGATAGCAAGGTCATGCTGCCTCTTCTTATTGATCTTTTGAGATTTGGGTCACCTAAAGGGAAGGAGAATTCAATAACGCTATTACTAGGACTGTGCAAAGAAGAAGGTGAGCTTGTGGCAAGGCGTCTCTTGGCCAATCCGCGAAGCATTCCTTCGCTTCAAAGCTTGGCTGTTGATGGTTCCTTGAGAGCTCGCAGAAAGGCTGATGCCCTGCTTAGACTGCTTAATAGGTGCTGCTCTCAACCTCATCATTCTGTTTG 2036 0.4194 MEEALSAMISSGFSPTGSLMDSLIHISNEVASIEKFPCAHAKNVSSMIRRVKLLSSLFGDIQETDTPLPPSSILCFTELFSVIRRVKLLIQECKDGSSLWGLIQLEFISNKFYVLVKEMGSALNILPLSLLNITADAREQVELLHRQTKRVELFIDPRELQRREQLLQEMANKGYVDFGKVQQILSSIGVRTPSDYYGEVSKLEAEAQKQAGTGGLIVVSHINNLITLVTYSISTIFRDAENEREKEECKPLSAFLYKNNDTSSSSQPVMPNIPDEFRCPISLDLMKDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHENNVPVNEPTISFSSASEGNNSKNNLCEKAVDHISANKAAADAVKMTAEFLVGKLATGSPDIQRQAAYELRLLAKTGMNNRRIIAEAGAIPFLTTLLGSDDPRIQEHAVTAFFNLSIFDNNKLLIMASGAVDNIVEVLELGKTMEARENAAAAIFSLTMVDDFKVTIGARPRAIPAVVGLLREGTSIGKRDAAAALFNLAVYNPNKVNIIYAGAIPVLIDLLMDDRAGITDDALAVLALLLGCSQGLEQIKDSKVMLPLLIDLLRFGSPKGKENSITLLLGLCKEEGELVARRLLANPRSIPSLQSLAVDGSLRARRKADALLRLLNRCCSQPHHSV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01721 678 PANTHER U BOX DOMAIN-CONTAINING 17 676 - -
Bva12g01721 678 SMART arm_5 377 416 IPR000225 GO:0005515
Bva12g01721 678 SMART arm_5 584 625 IPR000225 GO:0005515
Bva12g01721 678 SMART arm_5 459 500 IPR000225 GO:0005515
Bva12g01721 678 SMART arm_5 502 542 IPR000225 GO:0005515
Bva12g01721 678 SMART arm_5 543 583 IPR000225 GO:0005515
Bva12g01721 678 SMART arm_5 418 458 IPR000225 GO:0005515
Bva12g01721 678 SUPERFAMILY ARM repeat 389 667 IPR016024 -
Bva12g01721 678 Gene3D - 509 667 IPR011989 -
Bva12g01721 678 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Bva12g01721 678 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 676 - -
Bva12g01721 678 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Bva12g01721 678 Gene3D - 351 508 IPR011989 -
Bva12g01721 678 Pfam U-box domain 273 343 IPR003613 GO:0004842|GO:0016567
Bva12g01721 678 Pfam Armadillo/beta-catenin-like repeat 421 457 IPR000225 GO:0005515
Bva12g01721 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 348 IPR013083 -
Bva12g01721 678 CDD RING-Ubox_PUB 277 319 IPR045210 -
Bva12g01721 678 SUPERFAMILY RING/U-box 263 347 - -
Bva12g01721 678 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01721 Bva-Chr12 14407814 14409850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01721 17 673 U-box Gene Family AT3G46510 37.801 6.55e-129 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01721 - - gmx:100793498 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01721 12 14407814 14409850 Bva12g01721 12 14407814 14409850 ECH