Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01720 ATGAAGGGCTACGAGCCCCGTTCAAGCTCTTCCTGCGCAGCCTGCAAGTTTTTGAAGAGAAGATGCATTCCCAACTGCATATTTGCACCTTATTTTCGCTCTGATGAGTGCAAGAAATTTGCCAAAGTTCACAAGGTGTTTGGAGCAAGCAATGTCAGCAAGATCCTTATAGAAGTTCCAGAGGAGCAGAGAGAGGACACGGTGAATTCGCTGGCTTATGAGGCTGAGGCAAGGCTTAGAGACCCAGTTTATGGATGTATTGGTGCCATAGCTTTGTTGCAGAGAAAGATGGTGGAGCTCCAGCATGACTTGGCTATTGCAAAAGCTCGTCTTGCTCGTTGTGCTACTGCTTCTGCTGCCGCTGCTACCCCTTCTTCAACTGATATCTTGAATTCCCACGTTAGCTTGGCTCCTTTCCCTGACTTCTCCACTTGCAGTGATTTCAATGATAGCTTCTGCCTCAGTTCTTCTTCCCCGTCTCAATTATTCAGCCGAAATGAAACGGTGGatgatttttttcaattccCGTATATGTTTTG 539 0.4564 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKARLARCATASAAAATPSSTDILNSHVSLAPFPDFSTCSDFNDSFCLSSSSPSQLFSRNETVDDFFQFPYMF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01720 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 160 - -
Bva12g01720 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 160 - -
Bva12g01720 179 Coils Coil 90 110 - -
Bva12g01720 179 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Bva12g01720 179 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01720 Bva-Chr12 14400985 14401855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01720 1 148 AS2 family AT3G11090 65.541 1.51e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva12g01720 LOB 7.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01720 - - gmx:100305534 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01720 12 14400985 14401855 Bva12g01720 12 14400985 14401855 ECH