Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01715 ATGAACAACCACGATGCATCATCAACCCCACCTTCTCTGCACCCTCACCCACCCCAAGAAACCGCCACCACCGCTCCCACCACCACTCCTTGTGAAACATCTAACAGCgccaacagcagcagcagcaacaacagCAACTGTAACAGTAACAGCAACACCAACACCAACGGTCGCAAAGGCAAAGGTGGTCCTGACAACAACAAATTTAGATACCGTGGTGTGAGACAGCGAAGCTGGGGCAAATGGGTGGCTGAGATCCGAGAGCCCCGCAAGCGGACCCGCAAGTGGCTCGGCACTTTCGCCACCGCAGAGGACGCCGCCAGAGCCTACGACCGCGCCGCCATCATCCTCTACGGTTCAAGGGCTCAGCTTAACCTTCAACCTTCCGGCTCCTCTTCCAACTCCTCCTCTCGTggctcttcctcttcttcttctacacAAACCCTTCGACCCTTGCTACCTCGTCCTTCTGGCTTTGGCTTCACCTTCTCTTCCTCGTCCTCCGCCGCCTACCCTCTTACTGCGCCGTCATCGGGATTTGTGCCTTGCGGGATTTACAATTATAACCCTACTGGTGGCGGGAACATCAACACCGCATCCGTTCTGTGCCCTATCAATCACATAAACATAGTacaacatcatcatcatgtTCAACAAGTGGTGCAAGTACAACAACCGCACTATCAATCTGCAGATTCCGATCGTGGGAGCGCAGTACAAGGGCAAGTgagtaattataatatcattgCTGACACCACCTGTTCCACTTCTAACGGTGGAACCTCGTATCAGAACCACAATAGTCATCATCAACAACTGCAAcagcagcaacaacaacaacaatatcaTCAAGTGTCTCATCAACAACAAAATCACGAGAATTTCATGTACGATGAGATGAGCTCCTTGTTGGGTTCCTTGGAGCCAAGCTTGTCTTGTTCACAGAGTTCTATGCTTGCACCGGCTGCACTGGATCCGCCGCTGGGGATGGTGGGGCCTGCTCCTGGATCTCCACCTATGTGGCCAATGTTGACAAACGATGAAGAGTATCCAACTAATCTATGGGATTATAGCGATCCTTTCTTCCTTGATTTCTA 1097 0.4686 MNNHDASSTPPSLHPHPPQETATTAPTTTPCETSNSANSSSSNNSNCNSNSNTNTNGRKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSGSSSNSSSRGSSSSSSTQTLRPLLPRPSGFGFTFSSSSSAAYPLTAPSSGFVPCGIYNYNPTGGGNINTASVLCPINHINIVQHHHHVQQVVQVQQPHYQSADSDRGSAVQGQVSNYNIIADTTCSTSNGGTSYQNHNSHHQQLQQQQQQQQYHQVSHQQQNHENFMYDEMSSLLGSLEPSLSCSQSSMLAPAALDPPLGMVGPAPGSPPMWPMLTNDEEYPTNLWDYSDPFFLDF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01715 365 MobiDBLite consensus disorder prediction 257 278 - -
Bva12g01715 365 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 363 - -
Bva12g01715 365 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
Bva12g01715 365 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Bva12g01715 365 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Bva12g01715 365 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Bva12g01715 365 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 14 363 - -
Bva12g01715 365 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Bva12g01715 365 MobiDBLite consensus disorder prediction 1 73 - -
Bva12g01715 365 CDD AP2 70 127 IPR001471 GO:0003700|GO:0006355
Bva12g01715 365 MobiDBLite consensus disorder prediction 18 61 - -
Bva12g01715 365 MobiDBLite consensus disorder prediction 126 152 - -
Bva12g01715 365 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677
Bva12g01715 365 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01715 Bva-Chr12 14376732 14377829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01715 58 365 AP2-EREBP Transcription Factor Family AT2G40220 43.865 1.14e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva12g01715 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01715 K09286 - jre:108991752 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01715 12 14376732 14377829 Bva12g01715 12 14376732 14377829 ECH