Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01714 ATGTCGAGCCAAGACGCTCAGGCATTCAATTGGCATTACAATGAAATCGCTGATCGGGACTTGCAAATCCGGGGCCgaactttcttcttcatcatcgtTCTCTTCTCCGTTATCCTTCTCGTTACCCTTCTCTTCCTCTACTCTCGCTGGATCTGCCGCTACCGGGGCCAACTTCCGACAACCTCCGACTTTGGCCCCTCGCCACCACAGGGCCTGGACCCTGCTTCCATTAAGAAATTGCCCGTGATTTTGCACCAAACGACATCGGGTTCAAATTGCGCATTGGAGGAGATAGAGTGCTGCATCTGCCTCGGGGAGTTCAAAGATGGTGACAAATTGAAGGTTTTGCCTGGCTGCGATCATAGTTTTCACTCCGAGTGCGTTGATAAGTGGCTCGTGAATCAGTCTAGTTGCCCACTCTGCAGAGCTTCTCTCAAGCCCGATTCTTGTTCCTTTCAAAGGAGTTTGTTTCCGGAACCACCCATCAGGATCAACATCCAATTCta 506 0.4881 MSSQDAQAFNWHYNEIADRDLQIRGRTFFFIIVLFSVILLVTLLFLYSRWICRYRGQLPTTSDFGPSPPQGLDPASIKKLPVILHQTTSGSNCALEEIECCICLGEFKDGDKLKVLPGCDHSFHSECVDKWLVNQSSCPLCRASLKPDSCSFQRSLFPEPPIRINIQF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01714 168 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Bva12g01714 168 PANTHER RING-H2 FINGER PROTEIN ATL66 2 151 - -
Bva12g01714 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 148 IPR013083 -
Bva12g01714 168 SUPERFAMILY RING/U-box 92 148 - -
Bva12g01714 168 SMART ring_2 100 141 IPR001841 -
Bva12g01714 168 Pfam Ring finger domain 99 142 IPR001841 -
Bva12g01714 168 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 151 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01714 Bva-Chr12 14371877 14372734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01714 2 151 C3H Transcription Factor Family AT3G11110 44.654 1.57e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01714 - - gmx:100803278 225.713