Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01660 ATGGAAACTCTGTATCCATCTTCTTTTATGCCAAACCAAGATTGGTTTGTGCAAGAGAGTCACAGCACAGAATGGACTAGGGAACAGAATAAGCTATTTGAAAGTGCCCTTGCCATATATGACAAGGAAACCCCAGACCGATGGCTGAAAGTTGCAGCTATGATTCCTGGGAAGACTGTGTATGATGTGATGAAGCAGTACAGGGAATTATTAGAGGATGTCTGTGAAATAGAGGCAGGGCGGGTTCCAATTCCTGGATATCCTCCCTCTTCCTTCACGTTTGAATGGGTTGATAATCACAATTATGATGCATACAGAAAGAAGCCTGCAGCAGTCAGGGGTTCTGAAcaggagagaaagaaaggggtTCCATGGACAGAAGAAGAACACAGGCGTTTTCTGATGGGACTTCTAAAGTATGGTAAAGGAGACTGGAGAAATATCTCTCGCAATTTTGTAGTCACAAAGACTCCTACTCAAGTGGCAAGCCATGCTCAGAAGTACTATATAAGGCAGAACCATTCTGGAGTAAAAGAGAGGAGGAGACCAAGTATACACGATATCACCATTGTTAATCTTACAGAATCCACCACAGAAGATAACAGCAAGCCCCTTTTATTCAACGAGTCTCCTTTGCTCTCGCCACACCAGAAGTCCCCAAAAGTGCAAGTTAATTGGAATCACCATAATGATGGATCACTTATGGTTTTCGACCAACATGGTGACAATTTGTTCTTGTCATCTTCAGCTGATATTGCTTCAAAGGGCCTAAAACTGCAGGGGCAGGACCTCTATGACTGCCTCCATGGGGCTTATGCCAACCTCAAAACTCAGGGTTTCAGGACTGCTTCTAGAGAGTTCAATAAGGCAGCTGCTTTTGGTATTCATGCATTGTA 896 0.4263 METLYPSSFMPNQDWFVQESHSTEWTREQNKLFESALAIYDKETPDRWLKVAAMIPGKTVYDVMKQYRELLEDVCEIEAGRVPIPGYPPSSFTFEWVDNHNYDAYRKKPAAVRGSEQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQNHSGVKERRRPSIHDITIVNLTESTTEDNSKPLLFNESPLLSPHQKSPKVQVNWNHHNDGSLMVFDQHGDNLFLSSSADIASKGLKLQGQDLYDCLHGAYANLKTQGFRTASREFNKAAAFGIHAL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01660 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Bva12g01660 298 SMART sant 121 171 IPR001005 -
Bva12g01660 298 SMART sant 21 73 IPR001005 -
Bva12g01660 298 ProSiteProfiles Myb-like domain profile. 25 71 IPR001005 -
Bva12g01660 298 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 279 IPR043363 -
Bva12g01660 298 Gene3D - 17 84 - -
Bva12g01660 298 Pfam Myb-like DNA-binding domain 124 168 IPR001005 -
Bva12g01660 298 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Bva12g01660 298 CDD SANT 124 168 IPR001005 -
Bva12g01660 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Bva12g01660 298 ProSiteProfiles SANT domain profile. 125 173 IPR017884 -
Bva12g01660 298 Gene3D - 123 174 - -
Bva12g01660 298 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Bva12g01660 298 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 279 - -
Bva12g01660 298 CDD SANT 24 71 IPR001005 -
Bva12g01660 298 SUPERFAMILY Homeodomain-like 23 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01660 Bva-Chr12 14061856 14064031 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva12g01660 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01660 - - gmx:778039 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00219 02 3477289 3479733 Bva12g01660 12 14061856 14064031 ECH
Bva01g00064 01 508029 510082 Bva12g01660 12 14061856 14064031 ECH
Bva12g00207 12 3644460 3646483 Bva12g01660 12 14061856 14064031 ECH
Bva12g01660 12 14061856 14064031 Bva12g01660 12 14061856 14064031 ECH