Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01655 ATGTCTTTTCTCGGTACCCAACTAAAATGCAAGGCTTGTGAGAAAACGGTCTATCCCGTTGATCAGTTGTCTACAGATGGAGCTGTTTACCATAAGGCTTGCTTCAGGTGTTCTCATCGTAAAGGAACATTAAAGTTAGGAAACTATTCTTCAATGGAAGGCGTTCTCTACTGTAAGCCTCACTATGAGCAGCTCTTCAAGGAGGCAGGCAATTTCAGCAAGAACTTCCAGTCACCTGTGAAGTTAGCTGACAAGACAACTCCTGAActgACAAGGTCACCTAGTAAAGCAGCTAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGCAAAACTGCGTATCCATTGGAGAAGGTAACAGTGGAGGGACAAGCTTATCACAAATCCTGTTTCAAGTGTTCACACGGTGGCTGTCCCATATCGCCATCAAATTATGCAGCCCTCGAGGGCATTTTGTACTGCAAGCACCATTTCTCTCAACTTTTTAAGGAGAAAGGGAGCTATAATCATCTGATCAAGTCTGCATCAATCAAACTGGCAGCAGCCTCTGTTCCAGAATCTTA 569 0.4376 MSFLGTQLKCKACEKTVYPVDQLSTDGAVYHKACFRCSHRKGTLKLGNYSSMEGVLYCKPHYEQLFKEAGNFSKNFQSPVKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKLAAASVPES 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01655 189 PANTHER OS06G0237300 PROTEIN 1 189 IPR045268 GO:0051015
Bva12g01655 189 CDD LIM2_SF3 108 168 - -
Bva12g01655 189 SMART lim_4 107 159 IPR001781 -
Bva12g01655 189 SMART lim_4 9 61 IPR001781 -
Bva12g01655 189 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 189 - -
Bva12g01655 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Bva12g01655 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Bva12g01655 189 Gene3D Cysteine Rich Protein 6 74 - -
Bva12g01655 189 Gene3D Cysteine Rich Protein 102 172 - -
Bva12g01655 189 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Bva12g01655 189 Pfam LIM domain 108 163 IPR001781 -
Bva12g01655 189 Pfam LIM domain 10 65 IPR001781 -
Bva12g01655 189 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Bva12g01655 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Bva12g01655 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Bva12g01655 189 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01655 Bva-Chr12 14042016 14045216 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Bva12g01655 LIM 4.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01655 K09377 - gmx:100809121 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01655 12 14042016 14045216 Bva12g01655 12 14042016 14045216 ECH