Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01648 ATGACCCAGGAAGACCGCACCGGCTCTCCCTCCGGCGATGCTGCTCACAATGGCGTCGCCCATTCCGAAATCGCTGGCGGTGATGCCGAGTTGGCAGCACTTGGCGACGGAAACGTTGCCGGTAGAGTGAAGGGACCCTGGTCTCCGGAAGAGGACGCTGTTCTCAGTAAATTGGTGAGCAAGTTTGGGCCCAGGAATTGGAGCATGATTGCCCGAGGAATACCCGGTCGGTCTGGCAAGTCGTGCCGTCTCCGATGGTGTAATCAGCTCGATCCTTGTGTTAAGCGCAAGCCGTTCACGGAGGAAGAGGATCGTATTATAGTTGCAGCGCATGCCGTCCATGGAAACAAATGGGCAGCAATTGCAAGGCTTCTTCCAGGTAGAACAGATAATGCTATCAAGAACCATTGGAATTCTACACTGAAGCGCAGGTGTATGGAATTGGAAAGATACGTCCCATCACATGCTGATGCGACGGAAAATGGCAGCCCTGACAAAACAAAGGCATCCTCTGAAGAAACCATGTCAACTGGGGATAACACTTCATTTAAACCTACAGAAGTGAGAAATGTGATGATGCATAATGGAACCAAGCACCCTGAAGAAaatcttcaaagaaaaaatagcacTATGGTGGAGGAACATCCTACACTTCATCGACCAGTAGCACGTGTTAGTGCATTTAGTATTTATAATCCTCCAAACAGGTCAACAACCGGGTCTACAAATTTAAAGATGCACCCAATGCCGGGCCCTCTGATGCAGCCATCCAATGCAGAAATAGGAACCTgtaatttatttgatgatgTTGGCTTTGAGCCTATCGTTCCATCACAATGTGGCCATGGTTGCTGTGCAGCAGATTCAAGGGGAAGCCATTGTCGTAGTTCACTATTAGGTCCTGAGTTTGTTGACTATTTGGATTCTCCAACTTTCTCAAGTCATGAATTGATCTCCATAGCTACAGATTTGAACAATATTGCTTGGATCAAGAGTGGCCTTGAGAACCATGGTTCCGGGGTATCAGATAATCCAGCAAGCTTTCCAGTACCACAAGGGGCTACTACTGCTTCAGCTTCACAAACAGACTTCTCAGACTGTATGCAGTTTCAAGAGGGACCAAGCAAGTTTTTAGGTGCAACTACGCAGATGCCAAGACAGCCTTTTGCTATGTCAGCAGAAGTTTG 1187 0.4676 MTQEDRTGSPSGDAAHNGVAHSEIAGGDAELAALGDGNVAGRVKGPWSPEEDAVLSKLVSKFGPRNWSMIARGIPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDRIIVAAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMELERYVPSHADATENGSPDKTKASSEETMSTGDNTSFKPTEVRNVMMHNGTKHPEENLQRKNSTMVEEHPTLHRPVARVSAFSIYNPPNRSTTGSTNLKMHPMPGPLMQPSNAEIGTCNLFDDVGFEPIVPSQCGHGCCAADSRGSHCRSSLLGPEFVDYLDSPTFSSHELISIATDLNNIAWIKSGLENHGSGVSDNPASFPVPQGATTASASQTDFSDCMQFQEGPSKFLGATTQMPRQPFAMSAEV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01648 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 90 IPR017930 -
Bva12g01648 395 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Bva12g01648 395 CDD SANT 46 88 IPR001005 -
Bva12g01648 395 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Bva12g01648 395 Gene3D - 43 95 - -
Bva12g01648 395 MobiDBLite consensus disorder prediction 154 187 - -
Bva12g01648 395 MobiDBLite consensus disorder prediction 163 187 - -
Bva12g01648 395 ProSiteProfiles Myb-like domain profile. 44 90 IPR001005 -
Bva12g01648 395 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Bva12g01648 395 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Bva12g01648 395 CDD SANT 98 141 IPR001005 -
Bva12g01648 395 Gene3D - 97 177 - -
Bva12g01648 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Bva12g01648 395 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 18 337 - -
Bva12g01648 395 SMART sant 43 92 IPR001005 -
Bva12g01648 395 SMART sant 95 143 IPR001005 -
Bva12g01648 395 PANTHER MYB PROTEIN-RELATED 18 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01648 Bva-Chr12 14003259 14006953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01648 25 389 MYB Transcription Factor Family AT3G55730 46.173 9.49e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g01648 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01648 K09422 - gmx:100781228 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01648 12 14003259 14006953 Bva12g01648 12 14003259 14006953 ECH