Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01647 ATGGTGATTGCGGACAAGTCTCATGTTGATATCGACAATGGTTGTCGCCGGAGCTCTGTCGGCGGCGGTGGCAGTGAAGGGTGTTCAGAGACCAGCGACAGGCTGTCAGATGACGAGCAAAGAACCTCGTCCCCCGTCGAGTCTGGTCCCGAGATTGTAGGAGTGTCTGAGAAGGAGAGGAGATCATCTGCATCCGAGTGTTCggtggaggtggaggtggaggtggaTCTGGAGAATAGGGTGTCCGAAGTGAAGTTACATTTGGCTATAGTGGAGAGGGATTGTAGGATTTGCCATCTGAGTATGGATATGACTAATCAAGAATCTGGAACCCCCATTGAGCTGGGATGCTCTTGTAAAGACGATTTGGCTGCTGCACACAAACAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAGACCTGCGAAATCTGTGGATCAGTTGCACGCAACGTAGCTGGCTCGGTTGATGTTGAGATGGTAGAACAGTGGAACGAGGGAAATGACGCTGCCTTGGCAGCACCAACTGGAGCTGCACCTCCTGCAGAAACTCGAAATTTCTGGCAGGGTCATCGCTTCTTGAATTTCCTGCTAGCCTGCATGGTGTTTGCGTTTGTGATATCATGGCTTTTCCACTTCAACGTGCCCTCATG 656 0.4893 MVIADKSHVDIDNGCRRSSVGGGGSEGCSETSDRLSDDEQRTSSPVESGPEIVGVSEKERRSSASECSVEVEVEVDLENRVSEVKLHLAIVERDCRICHLSMDMTNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSVARNVAGSVDVEMVEQWNEGNDAALAAPTGAAPPAETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01647 218 ProSiteProfiles Zinc finger RING-CH-type profile. 87 153 IPR011016 GO:0008270
Bva12g01647 218 PANTHER OS01G0850200 PROTEIN 6 218 - -
Bva12g01647 218 SMART ringv_2 94 147 IPR011016 GO:0008270
Bva12g01647 218 Pfam RING-variant domain 95 146 IPR011016 GO:0008270
Bva12g01647 218 SUPERFAMILY RING/U-box 92 149 - -
Bva12g01647 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 156 IPR013083 -
Bva12g01647 218 CDD RING_CH-C4HC3_MARCH 95 147 - -
Bva12g01647 218 MobiDBLite consensus disorder prediction 1 61 - -
Bva12g01647 218 PANTHER ZINC FINGER, RING-CH-TYPE 6 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01647 Bva-Chr12 13999193 14001924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01647 38 218 C3H Transcription Factor Family AT5G05830 63.187 2.41e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01647 - - gmx:100816407 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01465 02 17914749 17921130 Bva12g01647 12 13999193 14001924 ECH
Bva01g00569 01 4298831 4302210 Bva12g01647 12 13999193 14001924 ECH
Bva12g01647 12 13999193 14001924 Bva12g01647 12 13999193 14001924 ECH