Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01630 ATGGAGGAAAATTTCGACCCTTGCCATGTCCCACAacagaacaaaaagaataagctCCGTGTAACATCCCAAACCCACCACGTTAACACTTTTCAGGCCACCATAGCTCCTCCTTTTGAACCAATTGCACTTCCCCCATCATCATCTAACCCCAACCCTCTGTTTAACGGCTGTGATTCCCGCGTATTACCCTCCCTTCCTCGACCCCTAATCTTTCACAATTTAACAAACAGTTCATGTGCAATTTCAGATTCCTCTCAGCCGTTTTGTGAGCTTCAGCTTTCCCATGCTATCTCAGCTTCCCAGGGACCAAAGGAGGAATGGAGAAACTGGGTTCCAATGGGTCCCCTTACGGGGTACGCCTTGATATTGAAGCAGTCAAGGTTTCTGAAGCCAGCAGAGCAACTTCTTGAAGATTTCTGTGGTGGAAGAGTTTCACAGTCCCCGCCATTGGACTGCTTGAGCGAAAATGGGGTTCATAAGGACCCCATTGTTGGTGGGGATCGAACAATCCATCACAGGAGGGATTCTGGACTCATGTCCTTGCTTGAGGAGGTGTACAAGAAATATACGCTATACTGGCAACAGATGCAGTCAGTGGTGGCATCGTTTCAAAAAGTTGCTGGGCTTGGAGATGCCACTCCTTATATATCATTTGCTATCAAAACCATTTGCAAGCATTTTGGATGCTTGAAGAATACCATAAACGATCAGCTTCAGTTTACAAGCAAGACTACTGCTGCCAATACTGTCGGGGAAAAGGAAATTCTGAGGTTGTCAACATTTGAGACAGAGCGTCATTCACCAAAATCAGCTCAGAGCTTACCCTTTGTTAAGCGACCTCAAAGGGGACTCCCAGATCAAGCTGTAGCTGTGCTCAGAACATGGCTTTTTGAACACTTCCTACACCCTTACCCTTCTGATTCAGAAAAGCATTTGTTGGCTCAACAAACAGGTCTTTCCCGAAGTCAGGTTTCTAACTGGTTCATAAATGCAAGAGTGCGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGCTTGAGAAACAGCATGCTCAAGTGCCTATTTCTGGCCCATCTATATCAAAACAAACCCACATGAGAAATCTGATACAACCAACAAGAAGCCTAGAAGGACAAAATGTCCAAACCAAACGATCAAGACATGAAGTTCCTAGTATTTCTGGTCAAAGCGAAGAACAGCAGATTGCATCGTACACTGTCTTTTCAACCGATTCCCACGTTAGAGCTTGTGGAGTTAGAACTGATGGAAGCAACGGATTGTCTTTAGCACTAGATCATCTCCACAATTTGGGTACTGATTTGTG 1328 0.4473 MEENFDPCHVPQQNKKNKLRVTSQTHHVNTFQATIAPPFEPIALPPSSSNPNPLFNGCDSRVLPSLPRPLIFHNLTNSSCAISDSSQPFCELQLSHAISASQGPKEEWRNWVPMGPLTGYALILKQSRFLKPAEQLLEDFCGGRVSQSPPLDCLSENGVHKDPIVGGDRTIHHRRDSGLMSLLEEVYKKYTLYWQQMQSVVASFQKVAGLGDATPYISFAIKTICKHFGCLKNTINDQLQFTSKTTAANTVGEKEILRLSTFETERHSPKSAQSLPFVKRPQRGLPDQAVAVLRTWLFEHFLHPYPSDSEKHLLAQQTGLSRSQVSNWFINARVRIWKPMVEEMHMLEKQHAQVPISGPSISKQTHMRNLIQPTRSLEGQNVQTKRSRHEVPSISGQSEEQQIASYTVFSTDSHVRACGVRTDGSNGLSLALDHLHNLGTDL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01630 442 CDD homeodomain 279 340 IPR001356 GO:0003677
Bva12g01630 442 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
Bva12g01630 442 SUPERFAMILY Homeodomain-like 279 347 IPR009057 -
Bva12g01630 442 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 108 433 - -
Bva12g01630 442 SMART HOX_1 279 343 IPR001356 GO:0003677
Bva12g01630 442 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
Bva12g01630 442 Pfam Associated with HOX 123 235 IPR006563 -
Bva12g01630 442 MobiDBLite consensus disorder prediction 378 397 - -
Bva12g01630 442 Gene3D - 278 352 - -
Bva12g01630 442 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 433 - -
Bva12g01630 442 SMART prehox3 118 237 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01630 Bva-Chr12 13921240 13923752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01630 109 348 Homeobox Transcription Factor Family AT5G02030 48.289 8.41e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva12g01630 POX 1.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01630 12 13921240 13923752 Bva12g01630 12 13921240 13923752 ECH