Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01628 ATGGCTCCACCGGAAATCAATCATCTTTCTCACCCATGTATATATGgagattttgtttcttcacaCTCAGAGAGAAAGTCTCCCTTTACGAAATGGTTGAGTAAGTTTTTCAAAAGTTGGTCCAATAGAGGAAGGGGAGGTCGTCATCTTCAACCTTCTGCAGATGAAAACATGTTTTGGCCTGCTCCAACTAGATCTTTGGGTGACGGTGCTAGAGCTCAGAAGGATAAAGAGGATCTGGACCGTGCTATTGCACTTTCATTAGGCGAAGATTTAAAGAGACCAAAAGATCATCAAGGATATAGATGGGGAACAGACCCTGATGAAGCAACGGCACCTCAGGATAGCTTAAACCCACCTTCAAATCGTCCATATGTCCCTACACCATTTTATCCTACTGGATACAGAATATGTGGTGGCTGCAACCAGGCAATACTCTACGGAAATTGTTTGGGATGCATGGATGCTTATTTTCATCCGGACTGCTTTTGCTGTCATTCTTGTCGTTATCCCATTACGGAACGTGAGTTTTCTTTGTCAGGGAGAAATCCATATCACAAGTCCTGTTTCAAGGAGTTAACGCACCCAAGATGTGAAGTTTGCCACCAATTTATTCCTATAAATGCTGCTGGCTTGATTGAGTATAGGTGTCatcctttttggtctcaaaagTATTGTCCGTCACATGAATATGATGATACTGCTCGATGCTGTAGTTGTGAAAGATTGGAGTCTTGGAATTCCAGATATTGTAGTCTGGAAGATGGACGGAGTTTATGCTTAGAGTGCATGGAATCTGCTATAACGGATACCGGTGAATGTCAACCTCTTTACCATGCCATCAGAGATTTTTATGAAGGAATGAATATGAAGATAAATCAACAAATTCCTATGCTTCTGGTTCAGAGAGAAGCACTCAATGACGCTATTGTTGGGGAGAAGAATGGTTTACATCACATGCCGGAGACAAGGGGCCTATGCCTTTCTGAAGAGCAAACTGTCACTAGTGTACATGGAAAGCCAAGAAGTGGAAGCCGCCGACTACTAGTACTGAGAGCTCAACCGCAAAAGCTCATTAGAAGATGTGAAGTTACAGCCATACTTGTTCTCTACGGTCTTCCAAGATTGCTAACAGGTGCTATCCTTGCCCATGAGTTGATGCATGGTTGGTTACGCCTCAAGGGTTTCCGCAACCTTGATCCTGAAGTAGAAGAAGGTATCTGTCAGGTTCTGTCTCATTTGTGGCTTGGTTCTGAAGTGAGGCCAAGCGTTTCAGACATGCCATCATCAGcagcttcttcttcctccatcATCTACACATCATCGAAGAAAGGTGATAGGTCTgatgttgaaaataaactgggtgaattttttttgcacCAGATTGCTAATGATTCTTCCCCAGCTTATGGGGGTGGCTTTAGAGCTGCTATTGCAGCTGTCAATAAATATGGTTTACGTAGTACTCTTGACCATATTCGTTATACTGGTAAATTCCCACTATA 1505 0.4053 MAPPEINHLSHPCIYGDFVSSHSERKSPFTKWLSKFFKSWSNRGRGGRHLQPSADENMFWPAPTRSLGDGARAQKDKEDLDRAIALSLGEDLKRPKDHQGYRWGTDPDEATAPQDSLNPPSNRPYVPTPFYPTGYRICGGCNQAILYGNCLGCMDAYFHPDCFCCHSCRYPITEREFSLSGRNPYHKSCFKELTHPRCEVCHQFIPINAAGLIEYRCHPFWSQKYCPSHEYDDTARCCSCERLESWNSRYCSLEDGRSLCLECMESAITDTGECQPLYHAIRDFYEGMNMKINQQIPMLLVQREALNDAIVGEKNGLHHMPETRGLCLSEEQTVTSVHGKPRSGSRRLLVLRAQPQKLIRRCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGFRNLDPEVEEGICQVLSHLWLGSEVRPSVSDMPSSAASSSSIIYTSSKKGDRSDVENKLGEFFLHQIANDSSPAYGGGFRAAIAAVNKYGLRSTLDHIRYTGKFPL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01628 501 MobiDBLite consensus disorder prediction 44 76 - -
Bva12g01628 501 Gene3D Cysteine Rich Protein 134 195 - -
Bva12g01628 501 Pfam Protein DA1 287 495 IPR022087 -
Bva12g01628 501 ProSitePatterns LIM zinc-binding domain signature. 138 172 IPR001781 -
Bva12g01628 501 ProSiteProfiles LIM domain profile. 136 196 IPR001781 -
Bva12g01628 501 PANTHER PROTEIN DA1-RELATED 2 20 501 IPR045218 -
Bva12g01628 501 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 163 - -
Bva12g01628 501 CDD LIM_DA1 138 190 - -
Bva12g01628 501 SMART lim_4 137 189 IPR001781 -
Bva12g01628 501 MobiDBLite consensus disorder prediction 95 123 - -
Bva12g01628 501 Pfam LIM domain 138 191 IPR001781 -
Bva12g01628 501 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01628 Bva-Chr12 13910523 13914684 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva12g01628 DA1-like 1.7e-92 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01628 - - gmx:100784976 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01628 12 13910523 13914684 Bva12g01628 12 13910523 13914684 ECH