Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01626 ATGGAATTCGTGGGCAAAACCGTCCAGAAAGAGGTCGAGGAGGGTGGGATTGTCTCCGGAACGGTGAAATCTTACGACCCATCATCTGGATTCGTGGAGATCGCCTACGAGGATGGTGATTCAGAGGAGTTGGAATCGTCAGAATTAGCTTCTCCTCCGAAAGGTGAACCGGAGTTTGGCAGGGTGGAGTCCCGGGTCGGAAGGAAACCCAAGAAGCGGCGTCGAGTGGACAGGAAGCTTGAGAATGGAGGAGGTGATTCAGGTAATGAAAGTGAGAATTCTGAATTTAGCAGGGTTTTAGAAGAACAAGCTTGTGTTAGTGAGAATTTGATAGGAAATGGTGAGTTAGATTGTGGGATGAAGAGAAGCCCAGAAATAGGAAATTGGAATGGAGGGAATAGGATTTGTAGTGTAGAAATTATTGGCAATGCCAATAGGAGTGTCAGCTCAAATGGCAGTGATGAAACTGTAGTAAAGGGAAGTGGGATGGAAGGGAATTCTACCAATGGGTTTGATTTGAATGCTGGGATTAACCTGAACGAGGATTTAAATCTGAATGATGGCTGTAGTTCACTTGTTAATTCTGAGGATAGtttgaagagaagagaatgtattgatttaaatttggaTGTAAGAGATGAATTTGACGTTAACGTGAATGTGTCTGACGTGGGCTGTTCAGCACTGGGAAAAATGAAGCGGGAAtgtgattttgatttgaatgtGGAGGTATGTGATGAAGATAATGAAGTCGAGGATGATGCTGGAGGGGGTGTGCAAGAGGAAGTTATGGGAGCTGCTGATGAAGATGTACAAGAGGAAGTTAAGGGATTTGATGGAGATGTACAAGAGCAAGTTATGGGGTCTGATGGAGATGTACAAGAGCAAGTTATGGGGTCTGATGGAGATGTACAAGAGCAAGTTAAGGGATCTGATAGAGATGTACAAAGAGAAGTTAAGGAAGCTGATGGAGATGTACAAGAGGAAATTAAGGAAGCTGATGGAGGCGTGCAAGAGGAAATTAGGGAAGCTGATGGTGATGCTAATGGAGGTGTACAAGAGGAAGTTAAGGAAGCTGATGGAGGTTTACAAGAGGAACTTAGGGAAGCTGATGGTAGGGAGGGACAATCTGATATCGGTGATTTGTTTGCTGAGAGGGGACGAAGCCAAGAGGGTGAGGCAGATATTAATCAGAAACCTATAGAAGAAGATAGTGTTATTGGGAAGTTGAATGATATCACTAATGATATCAAGTTGAAGGTAATTCACGGTTCTCCTGAGTGTGGAGCCAAGGATTCTTTAAGTTTGATTGAAGGGAAGGAAGATGGCTTGCACAATGGAAATGTAGCAGCTATTGACTCACAGGGGGTGTCAAATGCAATTTCAGTTAAGGGTTGTGATTCTATGGAGGTACAGCAAGAGTATAATCCTTCTCAAACTGGTATTGGCATAATTCATGAACATCAAGCTGATCCAGGAAGTTCATGCAAACAAGTAAGCAGCaggaggaagagaagaaaattgtcTGATAAAATGGAAACCACCACAGGGACAGTTTTGCGGAGGAGTTCTCGCAGGGCATCTGCTAGACAACATGTTTCTAGCACCGTGGCTTTGGATGTGACATATGATCCATCGTTGTCCCTTGGGCTGGGTGCATTAGCCGAAGATAAACCAATAGTCTCTGGATCTGAGAAATTTGAACAGTGTGATGTTCTTCCGTTAAAGCTGCAGTTACCCCCTTCttctcaaaatttgaatttagacAATATTCCTGTTCTTgagttattttctatttatgcCTGTTTAAGATCATTCAgtactatattaattttgagtcCATTTGAGTTGGAGGATTTTGTAGCAGTGCTGAAGTGTGCAACTCCTAGTatattatttgacagcattcatgtttctattttgaaaactctAAGAAAACACTTGGAATACCTTTCTAATGATGGTTGCCAATCTGCATCCCTTTGCCTGAGGAATCTTAACTGGGATATGCTGGACCTTGTTACATGGCCCATTTTCCTTGCCGAATACCTTCTAGTTCATGGTTTAGTTTTGAACTCTGGTTTTGATCTTAGCCACTTGATGTTCGTAAGTGATTATCACAAACAACCTGTATCAGTGAAGGTTCAGATTCTTCAGTGCCTCTGCGATGATATGATTGAAGCAGAAACAATAAGGTCAGAGCTTAACAGAAGATCATCAGTAACAGAGACTGATATGAACTTTGATCAGAATATGTATTTTGACATTTCCAAGAAAAGGAAGGCTCTTATGGATGTATCTGGTGGTTCTTGCTTGAGTGAGGAGATTGTTGATGACACAACTGATTGGAACAGTGATGAGTGCTGTCTCTGCAAGATGGATGGAAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCATTCAAGGTGTGTCGGAGTTGCAAACGACCATCTGCCAGAAGGTGACTGGTATTGCCCAGAGTGTGCAATTGGCAGACGTAACCCTTGGATGAAACCACTGAAGTCACTTCGAGGAGCAGATCTGTTAGGAATTGATCTACATGGTCGTCTTTATTTTAACTGCTGTGGTTACCTGTTAGTGTCAGATTCATCTGACACGGGATCATTGTTCAATTATTACCACAGAAATGATCTTAATGTTGTAATTGAAGTACTAAAGTCTGCAGATACTCTCTATGCTGACATATTAACAGCCATCTATAATTATTGGGATATTGCTGTGAACATGAATGCAGGAGCTACTAACTTGAATGTCTTAAATCAGAGTGCCTGCAAAAACATGCATATGAAGGAAGAATATTCTGCTATAAGTGCATCCTTACCACCTTTTTCATCTTCAGAGACGTGCTTGAATGGGAATGAGTCTTATGATCATAGAAAGCTTGAAGGAAATTCAAATGTTGGATGTCATGTTCATCTTGGCCAAGAGTTTCCATTAGCTGGAAAGTGGATAGATTCGATGACAACAATAGAAAGCCCTTGTATTGCTTCTGAAGCTTCAGGTGAAACTACAGAATTGAGATCAAGCATTGAGAACCTTCAAACACATAGGCCCCATGATTTCAATAGATCTGATGAGTCCTTGAATCTGTCATCAGTAAAACACCGACCAGTTGGTGACTGTTCTCTGACATCTTCCAGCTTAGATTTGAGAGATGGAAAAGTCATATCAATTGCTGGTAAAGGTGATGCTCCAGAAGTTCCTTATGGGACTGACTACATAAACTATTACAGCTTTGCTCGAACAGCCTCTTTAATTGCGGAGGAGTTGATGTGCAAAACTcctgaaaaaataaacaaaaacgtTGAAATGTCTGAAGAAGACATAATTTCGGAGCAAGGAAAGGTCATCATGAAGAAATCTACAAACTTTTGTTGGCCAAGTATCCAAAACTTAAATGCAGatgcccaaaaagaaaaatgtggtTGGTGCTTTTCTTGCAAAGGTCCATATGATGACAGGGATTGCCTGTTTAATGCTGTGGTAAGGCCTATTTGGGAAGTCtctaaaagtaatttaattgggcttcaacCTAGGAAGAACCAAAATGGTCATCTAAGAGATGTCATTAGCCAAAGTCTCTCCCTTGAGGATCGTTTAGGCGGGCTTCTGTCAGGTCCATGGTTGAATCCCCATCACAGTAAGCTTTGGCGTAAAGATCTTCTGAAGGCATCTGATGTTGCTTCTGTTAAACATTTATTGCTCATGTTAGAGTTCAATTTGCAACGTCGCGCACTTTCAGCTGATTGGTTAAAACATGTGGATTCTGTTGTTACCATGGGTTCAGCTTCTCATATTGTGGTCAGTTCATCACGCACATCCTCAAGGCTTGGTATTGGAAGGAAAAGGGCTAGATATTCGGATATTGAGTCCAACTCCTCTTCAAATACTACCAGTGGTTTGGGAATATATTGGTGGAGAGGTGGTAGGGTTTCCCGTCATTTGTTTAATTGGAAGGTTTTGCCACGCCCCTTGGCTGCAAAGGCTGCTAGACAAGCGGGGTGTACAAAGATTTCTGGTATATTATATCcagaaaattcagattttGCGAGGAGGAGCAAATATGTTGCTTGGCGAGCTAGTGTGGAGACATCAACAAGTGTTGAGCAGCTTGCTCTCCAGGTTAGAGAGCTTGATTCTAACATTAGGTGGAACGACATTGAGAATACCCATCCTCTATGTGTGTTGGACAAGGAATCCAGAAAATCAATCAGGCTGTTCAAAAAGGCAATTGTTCGCAGGAAGCACACTGAAGGGGAATCTGTAAAATATCTTCTTGATTTCGGGAAAAGAAGGGCTATTCCTGATATTGTTATTCGACATGGTTCTTTGTTGGAACAACCGTCTAGTGAGAGGAAGAAATATTGGCTGGATGAGTCTCATGTTCCCTTGCATCTTCTAAAAAACtttgaggaaaaaagaattgcCCGCAAGTCCAATGGAACGAAATCAGAAAAATCTCTTCAAATTGATAGAGGAAAAAACATGTTTCCTCGTCAAAGGGGActttcatatttgttttctaGATTGGAAAAATTGGATTATCAACAATGTGGACAGTGCAACAGAGATGTTCCAATCAGTGAAGCTGTGACCTGCCAAATTTGCAAAGGATATTTCCATAAGAGGCATGTTAGGGGATCTGGTGGTACAGTTGCTACCAACTACACATATTCATGTCGTAGATGCCAGGAGGGGATGCATGTAAAGACCAATGctaaaagaaggaaagttgACCCAAAATTAGGAAAGGTTCAATCCCAAAAATGTAAAAGGTCCACTTCACTATGTAGATCAGCGAAAGGTCGAGCCAATCAAAAGTCATTAAGCAAGGGGCGTCAAGTAAAATctagaaataagaaaagtgtCCCAAGTGTGCCACTTCGCCGTTCTGCTAGGAATGCTAAATGCTTGTCtttgcaaaataaaaggaagGTGGGACGcaaaaaggggaagaaaagTAAACCCAAGAAGGTGACACCTAGAAAGCCCAAGGAAAATACTGCTCAATGTAAGAAGTCTACAGTAAATGCTCTGTGTAAGAAACGGACGCATGTCTATAACAGCTACTGGTTGAATGGTCTTCGGTTGTCTAGAAAGCCAAATGATGAACGAGTGGTACTGTTTGGCAAGAAAAAACATCTTGCACCATGTGAAGATTTTTCTGGCACCCTTGATCATCCTAAATGCCAGATTTGTTGTGGAGATGGGTGTGCTTTAAACTATATTGCGTGTGAAATCTGTGGAGAGTGGTTTCATGGGGATGCTTTTGGGCTTACTATAGAGAATGCCAGACAACTTATTGGATTTAGGTGTCATGTCTGTCGTGATAGAGCAGCTCCAATCTGCCCCCATATGAAGAGAGATGCATTGTCTCCTGCTGAAAGCAACTCTGCAATTGAGTGCACAGAGGAATTATCTAATCCTGTTCCACCTCAACCTTTGAGTGAGATCCCATGCAATTA 5489 0.3953 MEFVGKTVQKEVEEGGIVSGTVKSYDPSSGFVEIAYEDGDSEELESSELASPPKGEPEFGRVESRVGRKPKKRRRVDRKLENGGGDSGNESENSEFSRVLEEQACVSENLIGNGELDCGMKRSPEIGNWNGGNRICSVEIIGNANRSVSSNGSDETVVKGSGMEGNSTNGFDLNAGINLNEDLNLNDGCSSLVNSEDSLKRRECIDLNLDVRDEFDVNVNVSDVGCSALGKMKRECDFDLNVEVCDEDNEVEDDAGGGVQEEVMGAADEDVQEEVKGFDGDVQEQVMGSDGDVQEQVMGSDGDVQEQVKGSDRDVQREVKEADGDVQEEIKEADGGVQEEIREADGDANGGVQEEVKEADGGLQEELREADGREGQSDIGDLFAERGRSQEGEADINQKPIEEDSVIGKLNDITNDIKLKVIHGSPECGAKDSLSLIEGKEDGLHNGNVAAIDSQGVSNAISVKGCDSMEVQQEYNPSQTGIGIIHEHQADPGSSCKQVSSRRKRRKLSDKMETTTGTVLRRSSRRASARQHVSSTVALDVTYDPSLSLGLGALAEDKPIVSGSEKFEQCDVLPLKLQLPPSSQNLNLDNIPVLELFSIYACLRSFSTILILSPFELEDFVAVLKCATPSILFDSIHVSILKTLRKHLEYLSNDGCQSASLCLRNLNWDMLDLVTWPIFLAEYLLVHGLVLNSGFDLSHLMFVSDYHKQPVSVKVQILQCLCDDMIEAETIRSELNRRSSVTETDMNFDQNMYFDISKKRKALMDVSGGSCLSEEIVDDTTDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGVANDHLPEGDWYCPECAIGRRNPWMKPLKSLRGADLLGIDLHGRLYFNCCGYLLVSDSSDTGSLFNYYHRNDLNVVIEVLKSADTLYADILTAIYNYWDIAVNMNAGATNLNVLNQSACKNMHMKEEYSAISASLPPFSSSETCLNGNESYDHRKLEGNSNVGCHVHLGQEFPLAGKWIDSMTTIESPCIASEASGETTELRSSIENLQTHRPHDFNRSDESLNLSSVKHRPVGDCSLTSSSLDLRDGKVISIAGKGDAPEVPYGTDYINYYSFARTASLIAEELMCKTPEKINKNVEMSEEDIISEQGKVIMKKSTNFCWPSIQNLNADAQKEKCGWCFSCKGPYDDRDCLFNAVVRPIWEVSKSNLIGLQPRKNQNGHLRDVISQSLSLEDRLGGLLSGPWLNPHHSKLWRKDLLKASDVASVKHLLLMLEFNLQRRALSADWLKHVDSVVTMGSASHIVVSSSRTSSRLGIGRKRARYSDIESNSSSNTTSGLGIYWWRGGRVSRHLFNWKVLPRPLAAKAARQAGCTKISGILYPENSDFARRSKYVAWRASVETSTSVEQLALQVRELDSNIRWNDIENTHPLCVLDKESRKSIRLFKKAIVRRKHTEGESVKYLLDFGKRRAIPDIVIRHGSLLEQPSSERKKYWLDESHVPLHLLKNFEEKRIARKSNGTKSEKSLQIDRGKNMFPRQRGLSYLFSRLEKLDYQQCGQCNRDVPISEAVTCQICKGYFHKRHVRGSGGTVATNYTYSCRRCQEGMHVKTNAKRRKVDPKLGKVQSQKCKRSTSLCRSAKGRANQKSLSKGRQVKSRNKKSVPSVPLRRSARNAKCLSLQNKRKVGRKKGKKSKPKKVTPRKPKENTAQCKKSTVNALCKKRTHVYNSYWLNGLRLSRKPNDERVVLFGKKKHLAPCEDFSGTLDHPKCQICCGDGCALNYIACEICGEWFHGDAFGLTIENARQLIGFRCHVCRDRAAPICPHMKRDALSPAESNSAIECTEELSNPVPPQPLSEVC 1827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01626 1827 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1800 - -
Bva12g01626 1827 MobiDBLite consensus disorder prediction 1595 1620 - -
Bva12g01626 1827 SMART testlast3 590 650 IPR018501 -
Bva12g01626 1827 MobiDBLite consensus disorder prediction 306 362 - -
Bva12g01626 1827 ProSiteProfiles DDT domain profile. 590 650 IPR018501 -
Bva12g01626 1827 ProSiteProfiles Zinc finger PHD-type profile. 785 832 IPR019787 -
Bva12g01626 1827 CDD PHD2_CHD_II 788 829 - -
Bva12g01626 1827 PANTHER PHD FINGER FAMILY PROTEIN 1 1800 - -
Bva12g01626 1827 MobiDBLite consensus disorder prediction 37 96 - -
Bva12g01626 1827 Pfam DDT domain 594 646 IPR018501 -
Bva12g01626 1827 MobiDBLite consensus disorder prediction 1650 1668 - -
Bva12g01626 1827 MobiDBLite consensus disorder prediction 296 362 - -
Bva12g01626 1827 MobiDBLite consensus disorder prediction 1579 1677 - -
Bva12g01626 1827 SUPERFAMILY FYVE/PHD zinc finger 1736 1789 IPR011011 -
Bva12g01626 1827 SMART PHD_3 1525 1572 IPR001965 -
Bva12g01626 1827 SMART PHD_3 787 830 IPR001965 -
Bva12g01626 1827 SMART PHD_3 1737 1784 IPR001965 -
Bva12g01626 1827 CDD PHD_SF 1526 1571 - -
Bva12g01626 1827 MobiDBLite consensus disorder prediction 489 516 - -
Bva12g01626 1827 SUPERFAMILY FYVE/PHD zinc finger 771 831 IPR011011 -
Bva12g01626 1827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1732 1790 IPR013083 -
Bva12g01626 1827 MobiDBLite consensus disorder prediction 1579 1594 - -
Bva12g01626 1827 Pfam PHD-finger 788 830 IPR019787 -
Bva12g01626 1827 ProSitePatterns Zinc finger PHD-type signature. 788 829 IPR019786 -
Bva12g01626 1827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 842 IPR013083 -
Bva12g01626 1827 SUPERFAMILY FYVE/PHD zinc finger 1523 1584 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01626 Bva-Chr12 13892577 13905536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01626 1 281 PHD Transcription Factor Family AT5G12400 34.602 6.02e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Bva12g01626 DDT 4.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01626 - - gmx:100800973 1860.88