Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01613 ATGAATCTCAAATTGTCAATGGTGATCCGCCCTATATCTTTTGTCATTCTCCtgGCATTTGCTGCACTCATAGTTGTCTTTTCATTCACACCTTGCTGGTATGTTATGGTCAAAAAATTGGATCAGCATGTGAGTTTGAATGCTGAGACCATCCTGTCCAAATTAAAATCTGAAGTTGAGCAGTCTGCAAAACTATTACAACCTATGAACTCATCAGCAACAAATTTAGCAAGATTTTTGAGCTCAACTTACAAGCTGACCAATGGTTCGTTCTCTGAAATTGAGACTAAGGcaaTTGAATGTTTTTACTTGGTGCAGGTGTCTCCAGTGTTATTTCAAGCATTTCAGGCAGTGCCTcacttagaccaaatctcatACATTGGGTTGGAAggtctctttctttcttactaCACTAACAATGATCAAATTCTTGCAATATACTCAAACTCTTCATTCTCTTATGGTTGGAGAGAAAAGACATATTATATCCAACCTGTGAACCGTGACACTGGAGAGCTATATGATGAAGCTGTAATATCAAAGCCTTTTATCAATGCATGTTGGGTTGAAGCAGCAGTTAACAGTTCATATGGATATGCCTCGTTGGGAACCAAGTGGAGCAATGGCCATGATCTTCTGTTCCTTAGCTCAGCTAGAATCACAGGAACTGGACTCATTTCTCTTGGGTTTCCAGTTGCAGCAATAATTGAGTTCATTACGCTGATTGATCGTGAAGGGGCAAGCTTGTATTTGGGTACCAAAGATGGGACAGTTCTTGCAGAAGGGATCCCAAATACCCACATTGTGTTTTCTGATGATGACAAGGCTTCTATCAAAACATTGAACGAGAATGGTGATGGTTATGATGTGGGTACTATCTCATGCAAGGATGAAGCTCCTTCTGTTTTGAATATTCATGATACAGACTACTTACTCCACTGCTCCCAAATTGACATAATGGGAGTGAAATTGGTTTATGCTTTGGTCATCCCGCAAAGTGGACTAGTAAACTTCTCGCACAAGATTAGAAAGCAGGGAGTGGCATTTTTGACTGTAATGTTGATCATGATATTGATAGCTTTCTccagttttatatttataaatgcaAGAGCTGCGAGGCGAGAGATGCATTTATGTGCTTCACTTATCAAACAAATGGAAGCCACTCAACAAGCAGAGAGAAAGAGCATGAACAAGACTGTTGCTTTTGCTAATGCTAGCCATGATGTTCGAGCTTATCTTGCTGGCCTTACTGGTTTGATAGAGTTGTGTTATCAGGAAGCTGCCCCTGGTTCAGAATTAGTgactaatttaaaacaaatggaTACTTGCACCAAAGACTTACTGGGACTGCTGAATTCTATACTTGATACAAGCAAAATTGAGGCAGGAAAAATGCAGCTTGACGAAGAGGAATTTGATGTGTCCCTACTTTTGGAGGATGTAGTTGATTTATACCATCCTGTGGCAATGAAGAATGGCGTTGATCTTGTATTAGACTCTTGCAATGGTTCTGTCATTAAATATTCGCGCGTGAAAGGCGACAGGGGAAAGCTTAAACAAGTGTTATGTAATTTACTGAGCAATGCTGTTAAATTTACTGAAGAAGGGCACATAACAGTCCGGGCATGGGCTCAGAAGCCAAGTTTCCAGAACTCAATAATTGCTGCGTCTAACCGATATGGTCGGGTCAAAAAATTGACTTGCTTGTTTGGCAAGAAAGATGAAGCAAGGGATGATCTAGAAGCCATGAATTCTGACCAACAAGATTTGAATTCTATGGAGTTTGTGTTTGAAGTAGATGACACAGGCAAAGGAATCCCCAAAGACAAACAGAAATCTGTGTTTGAGAATTATGTTCAGGTCAAAGAAACAGGTCTTGGACAAGGAGGCACTGGCTTAGGACTTGGTATTGTCCAGTCTTTGGTGCGTTTGATGCATGGAGACATTGGGATTGTGGACAAGGACAATGATGAAAAGGGAACATGCTTTAGGTTCAATGTCTTTCTTTCTGTCTCAGAGGTGGTCTCTGCAGGGAGCACGAGGGAAAGGGAAAGCACTGATTCTGGAGGAGAAAGAAATCAACCTTTGGGAGTGGGACTAGTAATTCACAGTCCTAGTGCTGGTTCAAGCATTCGTTCTTATAGTCCCAGGTTTGCTATCGGCACCTCTAGTCCTAAGCCAGAGGCTTCCCGTGTTGTTCTTTTGATTCAAGACAAGGAGAGACAAGAAGCAACTAAAAGATTCATGGAGACATTAGGCATCAGAGTTAAGGTTGTGAAGCAATGGGAACATTTGTTTTATACTCTCAACAAGATCAAACAGAAGAATCAACTTGTCAGCCCGAGTTCTTCAGGGGGATCAGAGTTGGGTTCGCGCTCTAATTCTGGAAATTCTAGAGGCAAAGATTTTCCTTTGAGTTCTATGGATGGAACTGATCAACAAACGACTTCAGTTTTCAAGAAGACTAACACGGGATCTACTCCCGGTTTTGTTCTAATTGTGATTGATGCATTAGCGGGACCATTTTCAGAGCTTTGCAGGATGATATCTAGTTTTAGAAGAGGCCTTCGCAATCCTTGTAAGGTGGTTTGGTTAGATAAGGGACTTAAGCGCAGTGTTAATTTCAAAGACCTTGATGAGGATATGTTTGATCCAAATGACTTTGTTATAACCAAACCATTTCATGGTTCTCGTTTGTTTAACGTTATAAAGCTTCTTCCTGAATATGGTGGCACCTGGCAAAGTAGTTCTAGCAGAACAAACATAGAAACTAGTCATAACAAAGCTAGTAGAGATTCAGGTTTGCCAAAATACCCCGGCATGGACAAATCACAAGCTGAACCAGACAGTGGCGGCAGCTCAAAGGGTGAACAATTTGGGAAAGAAACACACTCAATGTCTAAAGGTAAGGCTAAAGCAAAAAATTCTCCAAGTTATGGAAGCCCAGTTCATCAAGAACAATCTGATGTGTCAAGTTTCGGAAAACCCCTGAGTGGTAAGAAATTTCTGCTTGTGGAGGATGCAGAACTTTTACGCAAGATAGCTTTAGCCACTCTGGTGCGGCTTGGTGGGATTGTTGAGCAATGCACGAATGGAGCAGAAGCTGTGAGGCTGGTTGAGAAGGCTCTAACTGGGGATTTTCCCAATTTTCCCTATGATTATATCATAATGGATTGTGAGATGCCAGTGATGAACGGTTTTGAGGCAACAAGGAGGATAAGGGAGATGGAGAGACTCTTTGGTATTCACATTCCTATCATTGCATTGACTGCTCATACCTCTGGGAAAGAGGCAAGCATGACCATTGCAGCTGGAATGGACGTTCATTTGAACAAACCCGTTACTAAAGAACATTTGCTAGAAGCCATCAGATACATACACagtaaata 3392 0.4048 MNLKLSMVIRPISFVILLAFAALIVVFSFTPCWYVMVKKLDQHVSLNAETILSKLKSEVEQSAKLLQPMNSSATNLARFLSSTYKLTNGSFSEIETKAIECFYLVQVSPVLFQAFQAVPHLDQISYIGLEGLFLSYYTNNDQILAIYSNSSFSYGWREKTYYIQPVNRDTGELYDEAVISKPFINACWVEAAVNSSYGYASLGTKWSNGHDLLFLSSARITGTGLISLGFPVAAIIEFITLIDREGASLYLGTKDGTVLAEGIPNTHIVFSDDDKASIKTLNENGDGYDVGTISCKDEAPSVLNIHDTDYLLHCSQIDIMGVKLVYALVIPQSGLVNFSHKIRKQGVAFLTVMLIMILIAFSSFIFINARAARREMHLCASLIKQMEATQQAERKSMNKTVAFANASHDVRAYLAGLTGLIELCYQEAAPGSELVTNLKQMDTCTKDLLGLLNSILDTSKIEAGKMQLDEEEFDVSLLLEDVVDLYHPVAMKNGVDLVLDSCNGSVIKYSRVKGDRGKLKQVLCNLLSNAVKFTEEGHITVRAWAQKPSFQNSIIAASNRYGRVKKLTCLFGKKDEARDDLEAMNSDQQDLNSMEFVFEVDDTGKGIPKDKQKSVFENYVQVKETGLGQGGTGLGLGIVQSLVRLMHGDIGIVDKDNDEKGTCFRFNVFLSVSEVVSAGSTRERESTDSGGERNQPLGVGLVIHSPSAGSSIRSYSPRFAIGTSSPKPEASRVVLLIQDKERQEATKRFMETLGIRVKVVKQWEHLFYTLNKIKQKNQLVSPSSSGGSELGSRSNSGNSRGKDFPLSSMDGTDQQTTSVFKKTNTGSTPGFVLIVIDALAGPFSELCRMISSFRRGLRNPCKVVWLDKGLKRSVNFKDLDEDMFDPNDFVITKPFHGSRLFNVIKLLPEYGGTWQSSSSRTNIETSHNKASRDSGLPKYPGMDKSQAEPDSGGSSKGEQFGKETHSMSKGKAKAKNSPSYGSPVHQEQSDVSSFGKPLSGKKFLLVEDAELLRKIALATLVRLGGIVEQCTNGAEAVRLVEKALTGDFPNFPYDYIIMDCEMPVMNGFEATRRIREMERLFGIHIPIIALTAHTSGKEASMTIAAGMDVHLNKPVTKEHLLEAIRYIHSK 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01613 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 514 668 IPR003594 -
Bva12g01613 1130 MobiDBLite consensus disorder prediction 914 994 - -
Bva12g01613 1130 MobiDBLite consensus disorder prediction 914 932 - -
Bva12g01613 1130 CDD REC_hyHK_CKI1_RcsC-like 1003 1124 - -
Bva12g01613 1130 SUPERFAMILY CheY-like 998 1126 IPR011006 -
Bva12g01613 1130 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 386 466 IPR036097 GO:0000155|GO:0007165
Bva12g01613 1130 SMART REC_2 1001 1124 IPR001789 GO:0000160
Bva12g01613 1130 PANTHER HISTIDINE KINASE CKI1-LIKE 39 1125 - -
Bva12g01613 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 1125 - -
Bva12g01613 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 453 667 IPR036890 -
Bva12g01613 1130 MobiDBLite consensus disorder prediction 778 822 - -
Bva12g01613 1130 Gene3D - 466 677 IPR036890 -
Bva12g01613 1130 SMART HisKA_10 398 464 IPR003661 GO:0000155|GO:0007165
Bva12g01613 1130 Gene3D - 983 1129 - -
Bva12g01613 1130 ProSiteProfiles Histidine kinase domain profile. 405 672 IPR005467 -
Bva12g01613 1130 ProSiteProfiles Response regulatory domain profile. 1002 1128 IPR001789 GO:0000160
Bva12g01613 1130 Gene3D - 385 465 - -
Bva12g01613 1130 Coils Coil 574 594 - -
Bva12g01613 1130 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Bva12g01613 1130 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Bva12g01613 1130 PRINTS Bacterial sensor protein C-terminal signature 630 648 IPR004358 GO:0016310|GO:0016772
Bva12g01613 1130 Pfam Response regulator receiver domain 1004 1125 IPR001789 GO:0000160
Bva12g01613 1130 MobiDBLite consensus disorder prediction 971 994 - -
Bva12g01613 1130 CDD HisKA 403 460 IPR003661 GO:0000155|GO:0007165
Bva12g01613 1130 SMART HKATPase_4 514 672 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01613 Bva-Chr12 13784621 13790705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01613 1 1130 Histidine Kinase Gene Family AT2G47430 40.925 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva12g01613 HATPase_c 4.4e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01613 - - qlo:115973671 1124.38