Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01590 ATGGACCCAAATTCTTCTCAAAGTTCTGGTCTGAATAATGGTTTCCAAATTGATGATTGGAACTTCACCTCCAATCCAGAACAGTTCCTAAATCTGGCAGACCAACCTGAAATCAACCAAAACTATTCATCCCCTCTTCCTTTCATGAATAATGTAGACCCAGTTGGTTTTCCATCTCATACAAGCCATAACTTTGAAGGTGAGATGCTTATTCCGTCGTGGGGTGTGGGCACTGCTGAAGGGTTTGCAGGTGTACCACCTTCAAGTGTGGCTTCAGTAGCTGACCCTTATTTGGAAGATGACTTTTCAGAAACCTACAAGTACTTGAGCCAAATTCTTACCGAGGAGAACTTTGAAGAAAAGCCATCCATGTTTTATGACCCTTTGAGTCTTCAAGTCACAGAGAAATCCTTCTATGATGCTCTTAAAGAGAGCAATCCTCTTTCACCCGATCAACACCCCCTTGACATTCACCATAGCCTTGATAGTCCTGATAATTATACTAGCAGTATTGATTCCAGCAATAATAGTAGCAGCAGTAGCACCACTGCCAACACCGCTAGCTCCATAGATCTTCCATGGCATGACAATCCTGTAGAGCTCAAGCCTTCTTCTTCGGTGGATCCCCCTCCTGCTGGTGATTATGCTTTTCAGTTCAGTTCGCAATCTATTCCTCAAAAGCCCTCTCCACCTCCAAATATTTTACCTAATTTTGATGAAGGACTGCTGGATTTGGGTTCTTCAATTACTGAGCTATTGGCTCAGAATATCTATAGTGATGCTGAATCTGTCTCACAGTTTAGGAAAGGGTTGGAGGAAGCTAGCAAGTTTCTTCCCAGAGATACTAAACTTACCACTGGTTTGGAGAGCAATACATTGTCTCTGGAACCAAAAGGTGGTACTGGAAAGGCAGTattgaagaagggagaagATGTTCGGGAGAATTCACATGGGTTAAAAGGTAGAAAGACACATGAGCGTGAAGGTAGTGATGAAGAAGGGAGAAGTAACAAGCAGTCAGCAGTGTATGTTGATGAGAGTGAACTAACAGATATGTTTGATCGAGTGTTGCTTAGTGTTGAAAATGTTCCTCTATGTTCTGAGCATGGAAGCGTGCAGAGTGGATCAGTCAAAATAACGCAACCAAGTGAACAGCCAAATTCATCTGAAGGAGGGAAGATTCGCTctaagaagaaaggaaagaagaaggaaactGTGGATTTGAGGACTCTACTGGTTCTATGTGCACAAGCTGTGTCTGCCAATGACAAGAGGACTGCTGACGAACTATTGAAGCAGATTAGGCAGCATTCTTCACCCTTTGGTGACGCATCACAGAGGTTGGCTCATTACTTCGCTAATGGTCTAGAGGCACGCTTGGTTGGTGCTGCTACTGGAGCCCAAATATTTTATACCTCTCTAAGCTCCAAGAGAATCTCCTCTACTGATATTTTGAAAGCTTACCAAGTTCTAATTTCTGCCTGTCCTTTCAagaagttttcaattttctttgcaaATAAAATGATTCTGAAAGCAGCTGAGAAAGTAGAAGGCCTTCACATCATTGACTTTGGTATCTCATATGGTTTCCAATGGCctattcttattaaatttctttcagaAAGAGCTGGTGGGCCTCCCAAGCTACGCATTACTGGCATAGAATTTCCTCAAGCTGGCTTTCGTCCAACAGAGAGAATTGAGGAGACTGGTCGTCGCCTGGCAAACTACTGTAAGCGTTTCAATGTGCCATTTGAATACAAAGCCATAGCGTCACATAAGTGGGAATCCATCCAAATTGAAGAACTTAATATTAACAGGAACAGCAATGATCTATTGGTAGTGAACTGTTTGATGAGGTTTAGGAATTTGCTTGATGACACAATTGAAGTAAACAGTCCTAGGAATGCAGTTTTGAGTTTAATCAGAAagataaatccaaatttttttgttcaaaccATTGTTAATGGATCCTACAATGCCCCTTTCTTTGTCACGCGGTTCAGGGAGGCGCTGTTCCATTTTTCTGCAATGTACGACATGTTTGAAACTCTAATACCCCGTGATTGTGAATGGAGGTTTATgcttgaaaaagaatttttcgGTCGGGAGCTTATGAATGTTGTAGCATGTGAAGGCTTGGAGAGGGTTGAGAGACCTGAGACATACAAACAGTGGCAGCTTAATGAGATTTTCCCAGAGTCTGGacatgtaaaaattaatactgACCAAGAGGTTTCCACTTTACCGAACCTTCAGATTTCTAATAGAATTACGTA 2279 0.398 MDPNSSQSSGLNNGFQIDDWNFTSNPEQFLNLADQPEINQNYSSPLPFMNNVDPVGFPSHTSHNFEGEMLIPSWGVGTAEGFAGVPPSSVASVADPYLEDDFSETYKYLSQILTEENFEEKPSMFYDPLSLQVTEKSFYDALKESNPLSPDQHPLDIHHSLDSPDNYTSSIDSSNNSSSSSTTANTASSIDLPWHDNPVELKPSSSVDPPPAGDYAFQFSSQSIPQKPSPPPNILPNFDEGLLDLGSSITELLAQNIYSDAESVSQFRKGLEEASKFLPRDTKLTTGLESNTLSLEPKGGTGKAVLKKGEDVRENSHGLKGRKTHEREGSDEEGRSNKQSAVYVDESELTDMFDRVLLSVENVPLCSEHGSVQSGSVKITQPSEQPNSSEGGKIRSKKKGKKKETVDLRTLLVLCAQAVSANDKRTADELLKQIRQHSSPFGDASQRLAHYFANGLEARLVGAATGAQIFYTSLSSKRISSTDILKAYQVLISACPFKKFSIFFANKMILKAAEKVEGLHIIDFGISYGFQWPILIKFLSERAGGPPKLRITGIEFPQAGFRPTERIEETGRRLANYCKRFNVPFEYKAIASHKWESIQIEELNINRNSNDLLVVNCLMRFRNLLDDTIEVNSPRNAVLSLIRKINPNFFVQTIVNGSYNAPFFVTRFREALFHFSAMYDMFETLIPRDCEWRFMLEKEFFGRELMNVVACEGLERVERPETYKQWQLNEIFPESGHVKINTDQEVSTLPNLQISNRIT 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01590 759 PANTHER SCARECROW-LIKE PROTEIN 34 96 729 - -
Bva12g01590 759 Pfam GRAS domain family 408 727 IPR005202 -
Bva12g01590 759 MobiDBLite consensus disorder prediction 370 402 - -
Bva12g01590 759 ProSiteProfiles GRAS family profile. 399 759 IPR005202 -
Bva12g01590 759 MobiDBLite consensus disorder prediction 143 215 - -
Bva12g01590 759 MobiDBLite consensus disorder prediction 303 339 - -
Bva12g01590 759 MobiDBLite consensus disorder prediction 162 192 - -
Bva12g01590 759 MobiDBLite consensus disorder prediction 291 343 - -
Bva12g01590 759 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 96 729 IPR005202 -
Bva12g01590 759 MobiDBLite consensus disorder prediction 370 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01590 Bva-Chr12 13610345 13613327 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01590 107 756 GRAS Transcription Factor Family AT1G07530 49.183 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva12g01590 GRAS 2.1e-96 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01590 - - adu:107461599 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01590 12 13610345 13613327 Bva12g01590 12 13610345 13613327 ECH