Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01587 ATGGAGGAAGCTCAGGAGCCTCACATTGAATCACTCGGccatgatgatgaaaatgaagcAATTACTGAAAGTTCTGCATTTGTTAAAGGGGAACCTCCAGAGGAAGACAGCAGTCCCCCTAAAGTTGATTCCGAGGTAGAAATCCTTCACGAgaaagttacaaaacaaataataaaggaGGGTCATGGGGAGAAACCTTCGAAATATTCAACATGCTTTTTGCATTACAGGGCATGGACTGAAAGCACACAACACAAGTTTGAAGACACGTGGAATGAGCAACGGCCAATTGAGTTGGTAATTGGAAAAGagaagaaagaaatgactGGTCTGGCCATTGGTGTGGCCAGCATGAAAGCTGGTGAGCGGGCCTTGCTACGTGTGAGCTGGGAGTTAGGATATGGAAAAGAGGGAAGCTTTTCCTTCCCGAATGTTCCACCTATGGCAGATTTATTGTATGAAGTTGAGCTCATTGGTTTTgatgaaacaaaagaaGGGAAAGCTCGTGGTGACATGACTGTGGAGGAAAGAATTGGTGCAGCAGATAGGAGAAAGATGGATGGGAATGCATTGtttaaggaagaaaaactaGAGGAGGCCATGCGACAGTATGAAATGGCTATAGCATATATGGGAGATGACTTCATGTTCCAACTGTTTGGGAAGTACAGGGATATGGCTTTGGCAGTTAAAAATCCATGCCACCTTAATATGGCAGCGTGCTTGATAAAGCTAAACCGGTATGAAGAAGCCATAGGACAATGCAGCACTGTATTGACTGAGGAGGAAAACAATGTCAAGGCACTATTTAGACGAGGCAAGGCTAAGGCAGCCCTGGGGCAGACAGATGCTGCCAGGGAAGATTTTCTAAAAGCGAAAAAATATGCCCCTGAGGATAAAGCAATTGCAAAAGAATTGCGTTTGCTTGCTGAACACGACAAGGCTCTTTATCAAAAGcagaaagagatatataaagGCATATTTGGACCAAGGCCTGAAGCAAAACCAAAGACAACTAATTGGCTTATTCTTATTTGGCAGTGGTTCTTGTCAGTATTTTATAGCCTTGTCAAGCTCTTTAAGGAGAAAAGGCAAAAATCTGACTA 1106 0.4005 MEEAQEPHIESLGHDDENEAITESSAFVKGEPPEEDSSPPKVDSEVEILHEKVTKQIIKEGHGEKPSKYSTCFLHYRAWTESTQHKFEDTWNEQRPIELVIGKEKKEMTGLAIGVASMKAGERALLRVSWELGYGKEGSFSFPNVPPMADLLYEVELIGFDETKEGKARGDMTVEERIGAADRRKMDGNALFKEEKLEEAMRQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSTVLTEEENNVKALFRRGKAKAALGQTDAAREDFLKAKKYAPEDKAIAKELRLLAEHDKALYQKQKEIYKGIFGPRPEAKPKTTNWLILIWQWFLSVFYSLVKLFKEKRQKSD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01587 368 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 30 329 - -
Bva12g01587 368 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP42-RELATED 30 329 - -
Bva12g01587 368 SUPERFAMILY TPR-like 173 324 IPR011990 GO:0005515
Bva12g01587 368 SMART tpr_5 266 299 IPR019734 GO:0005515
Bva12g01587 368 SMART tpr_5 232 265 IPR019734 GO:0005515
Bva12g01587 368 SMART tpr_5 181 214 IPR019734 GO:0005515
Bva12g01587 368 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 65 158 IPR001179 GO:0003755
Bva12g01587 368 Gene3D - 37 162 IPR046357 GO:0003755
Bva12g01587 368 Pfam Tetratricopeptide repeat 267 299 IPR019734 GO:0005515
Bva12g01587 368 ProSiteProfiles TPR repeat profile. 266 299 IPR019734 GO:0005515
Bva12g01587 368 Gene3D Tetratricopeptide repeat domain 163 294 IPR011990 GO:0005515
Bva12g01587 368 MobiDBLite consensus disorder prediction 1 22 - -
Bva12g01587 368 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 69 161 IPR001179 GO:0003755
Bva12g01587 368 MobiDBLite consensus disorder prediction 1 44 - -
Bva12g01587 368 SUPERFAMILY FKBP-like 41 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01587 Bva-Chr12 13596012 13599821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01587 52 328 Calmodulin-binding Proteins AT5G48570 33.922 1.16e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01587 - - gmx:100790587 646.351