Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01579 ATGTTAAGGGAGACATTCGAAGAAGAAACCGAAAAGCGCTCACTTTTGGCTTTTTCTTCAGTTGCTCACTTGCCCTTTTGGCCATTCTTAACCTTCTCTGCAACTACTTTCAGTGCATATGCCAATATGAGTTCTTTCTCAATTACACGGAAAAAGACACCATTCCAGAAACacagggaagaagaagaggcaAAGAAGAAGAGAGCTGAAGATGAGACTGCTCGCCTATATGCTGAGTTTGTTGAGTCATTTCAAGGAGATGGCACTCCTGGTTCAAAGACTTTTGTTCGAGGAGGAACAATTAATCCCAATGAGAGATTGAAAAATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGCAGTAGGTACGTCCCTTCCTTTATACCACCTCCTTTGGCAACAAAGGGGAAAGAATCTGAAAAGAAAAAAGAGGAGGAAAAAcccaaagaaagagaaaaagggaagTCACGGAACATAGATCATTTTATGGAAGAGTTAAAACATGAACAGGAGATGAGGGAGAGGCGAAATCAGGAACGTGAACAATGGCGTGATGGGCGTCATGGAGAACATTCTTCTTCCAGTCGCTTTGATGAACTTCCTGATGACTTTGATCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCACAGACTACAAATCTCTATGTCGGAAATCTCTCCCCAAAGgttgatgaaaattttctgcTCCGAACTTTTGGAAGATTTGGACCAATTGCAAGTGTCAAGATAATGTGGCCTAGGACAGAAGAGGAGCGAAGGAGGCAAAGAAATTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAAGCCGCCAAAGATGAAATGCAAGGAGTTGTTGTTTATGAGTATGAATTGAAAATCGGATGGGGTAAGTCTGTTGCTCTCCCATCACAAGCATTACCTGCGCCCCCACCTGGGCATATGGCCATCAGGAGTAAGGAGGGTGGCACTGTCATCTTGTCTGGTCCATCAGGTCCGCCTGTAACTTCTGTGCCAAATCAGAACTCTGAACTGGTTCTTACTCCCAATGTTCCTGATATTATGGTTACACCTCCTGAGGATGACCATCTGAGGCATGTGATTGATACAATGGCCTTGTATGTTTTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGCGGGGCCGTGGCAACCCTCTTTTCAGTTTCTTGTTTGAGCTGGGCTCCAAGGAACATACTTACTATGTTTGGAGACTTTATTCATTTGCTCAGGGCGATACTCTTCAAAGATGGCGAACAGAACCTTTTATCATGATAACTGGTAGTGGAAGATGGATTCCTCCAGCCTTACCAACGGCCAGAAGTCCAGAACAGGAAAAGGAGTCTGGTTCCACTCATGCAGCAGGAAGAAGCAGGcGTGTAGAGCCCGAAAGAACACTGACTGATGCACAGAGAGACGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGTCAGATAAAAGATGCTATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATTGTTGAAGTTCTAACAGAGTCATTAACACTTAAGGAAACTCCTATTCCAACTAAAGTGGCGAGGCTTATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCTGTTAGAAATGCATCTGCATATCGCACCAAATTTGAAGCAACATTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGGAGCATAACAGGACGTATTACTGCAGAGGCTCTAAAGGAAAGAGTAATGAAAGTTCTGCAAGTCTGGGCGGACTGGTTTCTCTTTTCAGATGCCTATGTGAATGGCTTGCGAGCCACTTTCCTTCGATCTGGAAACTCTGGTGTGATACCATTCCATTCCATCTGTGGTGATGCACCtgaaattgagaaaaaggCCACTTCTGAAGACACTGTTGATGGTAGCAAGACCAACCAAGATGCTGTACTGGCGATGGGTCGAGGAGCTGCAATGAAAGAGCTAATgtctcttcctctttctgaGCTGGAAAGACGGTGCCGGCACAATGGGTTATCACTCATTGGTGGTAGAGAAATGATGGTAGCACGGTTGCTTAGTCTAGAAGAAGCAGAAAAGCAAAGGGGTTATGAACTAGATGATGAGATGAAATATGCTCAAAACCAAGCAAGTTCAGGTAGATATCCAAGCAACCAGAGAGAAACAAGTATTGAGCCTGAACCAGTAGGATTGTCTGGATGGAACCACTATGAGAATGATTTGCCATCAGAAAGCGTAGGGTCTGTTTTGGCACCAACGCTTCCCATTCCAGAGCCTGAACTAAAACCCTTcatgaaaaaggagaagaacgATCCTGTCTTGCCAGTCTCTAAATGGGCTCGGGAGGATGATGAAAGTGACgatgaacaaaagaaaagtggaaAAGGTCTGGGGTTAAGCTACTCATCTTCTGGTAGTGAGAATGCGGGTGATGGTTCTGTTAGGGCCGATGAGTTGGAATCTGCCGCTGATACAAGCATTTCAGCACAACCTGACAGTGGAATGAATGAAGAACTGAGGCAGAAGCTAAGACGCCTAGAAGTTGCTTTAATTGAATATCGGGAGTCTCTTGAAGAGCGGGGGATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTGCAATGCACCGAAAACGCCTGCTAGTGGAGTATGGCTTGTCTGATTCTAGGGAAAATGGTCAAGGAAATAGACGAACATCTTCAGAGAGGAAGGACAGGCGTGATGATTCTCGAGACGTCTCTAGGAAGCGCCATCGTAGTCGCAGTAGAAGCTCTAGTCCACAACAGAAGTTATCAGttagagacagagagagagagcatgATGTAGAGAGAGACCGGGACAGACACAGGGATAGAACTCATGACTTTGATGGTGATAGAGGGAGGGACAGGGAGAAGAGTGGAAGCAGAGAGAGGGATGATCATGAAAGGGATAGAGGCAGAGATAGAGACCGAGACCGGCGGAGACGGCCCAAATA 3047 0.427 MLRETFEEETEKRSLLAFSSVAHLPFWPFLTFSATTFSAYANMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDGTPGSKTFVRGGTINPNERLKNDSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKESEKKKEEEKPKEREKGKSRNIDHFMEELKHEQEMRERRNQEREQWRDGRHGEHSSSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTARSPEQEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDAPEIEKKATSEDTVDGSKTNQDAVLAMGRGAAMKELMSLPLSELERRCRHNGLSLIGGREMMVARLLSLEEAEKQRGYELDDEMKYAQNQASSGRYPSNQRETSIEPEPVGLSGWNHYENDLPSESVGSVLAPTLPIPEPELKPFMKKEKNDPVLPVSKWAREDDESDDEQKKSGKGLGLSYSSSGSENAGDGSVRADELESAADTSISAQPDSGMNEELRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVAMHRKRLLVEYGLSDSRENGQGNRRTSSERKDRRDDSRDVSRKRHRSRSRSSSPQQKLSVRDREREHDVERDRDRHRDRTHDFDGDRGRDREKSGSRERDDHERDRGRDRDRDRRRRPK 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01579 1015 CDD RRM_SR140 227 310 IPR035009 -
Bva12g01579 1015 Gene3D Surp module 363 432 IPR035967 GO:0003723|GO:0006396
Bva12g01579 1015 SMART cwf21_2 859 908 IPR013170 -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 799 862 - -
Bva12g01579 1015 Gene3D - 139 311 IPR012677 -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 464 487 - -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 820 834 - -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 452 487 - -
Bva12g01579 1015 SMART 558neu5 492 627 IPR006569 -
Bva12g01579 1015 Coils Coil 59 79 - -
Bva12g01579 1015 SUPERFAMILY RNA-binding domain, RBD 221 319 IPR035979 GO:0003676
Bva12g01579 1015 ProSiteProfiles SURP motif repeat profile. 377 420 IPR000061 GO:0003723|GO:0006396
Bva12g01579 1015 MobiDBLite consensus disorder prediction 53 71 - -
Bva12g01579 1015 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 309 IPR000504 GO:0003723
Bva12g01579 1015 Coils Coil 490 510 - -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 918 938 - -
Bva12g01579 1015 Gene3D - 859 910 - -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 731 760 - -
Bva12g01579 1015 Pfam Surp module 375 427 IPR000061 GO:0003723|GO:0006396
Bva12g01579 1015 Pfam CID domain 492 620 IPR006569 -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 82 229 - -
Bva12g01579 1015 PANTHER RNA PROCESSING PROTEIN LD23810P 42 1010 - -
Bva12g01579 1015 SUPERFAMILY ENTH/VHS domain 489 627 IPR008942 -
Bva12g01579 1015 ProSiteProfiles CID domain profile. 485 630 IPR006569 -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 953 1008 - -
Bva12g01579 1015 SMART surpneu2 375 429 IPR000061 GO:0003723|GO:0006396
Bva12g01579 1015 MobiDBLite consensus disorder prediction 906 1015 - -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 731 749 - -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 52 71 - -
Bva12g01579 1015 Gene3D - 485 632 IPR008942 -
Bva12g01579 1015 SUPERFAMILY Surp module (SWAP domain) 351 432 IPR035967 GO:0003723|GO:0006396
Bva12g01579 1015 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 302 IPR000504 GO:0003723
Bva12g01579 1015 SMART rrm1_1 229 305 IPR000504 GO:0003723
Bva12g01579 1015 Pfam cwf21 domain 866 906 IPR013170 -
Bva12g01579 1015 ProSiteProfiles SAP motif profile. 679 713 IPR003034 -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 799 818 - -
Bva12g01579 1015 PANTHER - 42 1010 - -
Bva12g01579 1015 Coils Coil 860 880 - -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 141 211 - -
Bva12g01579 1015 MobiDBLite consensus disorder prediction 107 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01579 225 305 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.38e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01579 K12842 - gmx:100776093 1515.75