Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01575 ATGCAGTCCAAGTCTGAAACTGCTAATCGACTGAGGTCTGATCCGCATACCTTTCAAATGACCAATGTTTATTCTGAACCTTGGTGGCATGGTACTGGGTACAATCCCATCTCCCAAGCAATTGCTGGTGCAAATGCATCCAATTCATCCTCTCTAGAGGGCCCTACTGGTGATTCAGAATCCAATGAAGGCCAATCTTTGTCCAATAGTGAGTTGAAtgaggaagatgatgatgCCACTAAAGAATCACAAGCTACTGCTCCCAATCAGTCAGGAAATTATGGGCAAGAACACCAAGGTATGCAGCATGCTTCTTCATCTGCACCTTCATCACGTGTTGAATGCCTTGCTCAGGCTCCACAGCTTGAACTTGTTGGTCATTCAATTGCATGTGCCACAAATCCTTATCAAGATCCATATTATGGGGGAATGATGGCAGCTTATGGACATCAGCAGTTGGGATATCCTCCTTTTATGGGAATGCCTCATACCAGAATGCCATTGCCACTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTTAGGCGACGACAGGCTCGTGCGAAAGCAGAGCTTGAAAAGAAGCTAATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCTATGAGAAGGGAAAGGGGTACTGGAGGACGTTTCGCAAGGAAAACTGCAGCAGAGGCCCCAAACCAATCGGGCAAGGAAAAAGACGCTGGTTCTGGTCCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAAGCTTTGCACTCTGACTCTGCTGAAACCTGGAACTCTCCCAATGTGCAACAAGATGGTAGAGGATCCAAAGTGCATGGCAGATACGAATCTCACAATTATGCAAATGGCAGTGGCTCCTACCTTGTGAACTCAGGTGAAAGGGTTGATGAAGGGGATTGTTCTGGTCAGCAACGAGGAAGTATCTCCTCTGAGCAAGCTTCCCAGAGGCGCCATGCCATTCAGTA 1019 0.4553 MQSKSETANRLRSDPHTFQMTNVYSEPWWHGTGYNPISQAIAGANASNSSSLEGPTGDSESNEGQSLSNSELNEEDDDATKESQATAPNQSGNYGQEHQGMQHASSSAPSSRVECLAQAPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYPPFMGMPHTRMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRERGTGGRFARKTAAEAPNQSGKEKDAGSGPVLSSQSISSSGSEALHSDSAETWNSPNVQQDGRGSKVHGRYESHNYANGSGSYLVNSGERVDEGDCSGQQRGSISSEQASQRRHAIQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01575 339 MobiDBLite consensus disorder prediction 45 69 - -
Bva12g01575 339 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Bva12g01575 339 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Bva12g01575 339 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Bva12g01575 339 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Bva12g01575 339 Gene3D - 173 235 - -
Bva12g01575 339 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 330 IPR001289 GO:0003700|GO:0006355
Bva12g01575 339 MobiDBLite consensus disorder prediction 83 112 - -
Bva12g01575 339 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 330 - -
Bva12g01575 339 MobiDBLite consensus disorder prediction 320 339 - -
Bva12g01575 339 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Bva12g01575 339 MobiDBLite consensus disorder prediction 216 230 - -
Bva12g01575 339 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Bva12g01575 339 MobiDBLite consensus disorder prediction 251 284 - -
Bva12g01575 339 MobiDBLite consensus disorder prediction 45 112 - -
Bva12g01575 339 MobiDBLite consensus disorder prediction 209 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01575 Bva-Chr12 13489693 13494162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01575 16 277 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.866 2.07e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva12g01575 CBFB_NFYA 6.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01575 K08064 - gmx:100808378 512.686