Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01570 ATGCTTTGCTTTCTCTGTAAAACCATTTTTTCTCAAGCCCACAGGGAAATTGCTCCAATTTCCATTTCtatacaaaaccaaaatttatgGTTTTCTGTAAAATGCATGTCCTCCACTTCAAATGCGCAACCTTTTATAGTCTCGTATCTCATTAACACATGTGggttttcaccaaaaaaagcTGCTTCAGCTTCCAAGTACCTCAGTTTTCAAACTAGGGAAAAACCAGATTTGAAAATTGAGTTCTTCAAGAAACAAGGTTTCTCCCAAACCCAGGTATTGCGCATGATAAGAGGAGCTCCGCGTTTGCTTCTATTTGATACTGAGAAAAATGTCCTACCCAAAATTCAGTTTTTGAAGTCCAAAGGCATTTTGTGTTCTGAACTACCCAAAATCATATCATCTTGCCCTGATATTCTGCGAAGAAGCTTAGAGAAGCAAATCATTCCctcttttgatttctttgagAGCTTGTTTCAATCTGAAGTCAATTTCATGAAAGCTCTTAAACGTTGTCCACAGATTCTTGTTTTATGTAACACCCGTATTGTCCCTAATATCAAAGTGTTCAGAGAAGAAGGAGTTTCTGAACTTcttattgttaaattattagaacGGCAGCCCCGGGCATTGACTGGATCAGCTGATCGGTTTAAGGAGATTGTGGCAAAAGTGAGAGAAATGGGGTTTAATCCTTTGACCATGAAATTTATGATGGCTGTTGCTGTATTGGTATGCATTAGCAAATCTACGTGGACAAGGAAGGCTGATCTTTATAAAAGGTTGGGTTGGTCTGATGATGACATTTTAGCAGCATTTGAGAAGAATCCACAATTTGTAACAATTTCAGAGGATAAGATAGCGAAGACAATGAACTTTTTTGTCAATGAGATGGGTTGGGAATCTTCCACTTTAGCCAGATATCCAGTATTGCTCAGCTTAAGCCTAAAGAAGCGAATAATTCCAAGGGCTTCTGTAATCCAAGTTTTGTTGTCAAAAGGTCTTGTGAAACAGCTGGCTTTGCAGCAAATATTTTACTCAAGTGAAAAAGTCTTCTTGGACAAGTTTATCATGTGTCAAGGGAATGAAGCCGATGAACTATTAAAGCTATATCAGGAAAAAATGGATGTTGATCGGAAGAAATTGTA 1148 0.3589 MLCFLCKTIFSQAHREIAPISISIQNQNLWFSVKCMSSTSNAQPFIVSYLINTCGFSPKKAASASKYLSFQTREKPDLKIEFFKKQGFSQTQVLRMIRGAPRLLLFDTEKNVLPKIQFLKSKGILCSELPKIISSCPDILRRSLEKQIIPSFDFFESLFQSEVNFMKALKRCPQILVLCNTRIVPNIKVFREEGVSELLIVKLLERQPRALTGSADRFKEIVAKVREMGFNPLTMKFMMAVAVLVCISKSTWTRKADLYKRLGWSDDDILAAFEKNPQFVTISEDKIAKTMNFFVNEMGWESSTLARYPVLLSLSLKKRIIPRASVIQVLLSKGLVKQLALQQIFYSSEKVFLDKFIMCQGNEADELLKLYQEKMDVDRKKL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01570 382 Pfam mTERF 238 353 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 Pfam mTERF 80 289 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 26 377 - -
Bva12g01570 382 Gene3D Transcription termination factor 3, mitochondrial 167 370 IPR038538 -
Bva12g01570 382 PANTHER CGI-12 PROTEIN-RELATED 26 377 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 SMART mt_12 166 196 IPR003690 GO:0003690|GO:0006355
Bva12g01570 382 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01570 Bva-Chr12 13449254 13450924 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva12g01570 mTERF 5.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01570 K15032 - jre:108987210 351.673