LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g01562	ATGATGCAGGTTACCATGAGAGGTACTTTATTGCCATGTAAACTATTACAATACTCCCCGCATGTTCTGCAAAGCAGCTTGCAGAAACAAATCATTCCctcttttgatttctttgtgAGCTTGTTCCAATCTGAAGACAAGTTCATTAAAGCTCTTAAACGTTTTTCTAgcatttttgttcttaatacCGACGCCGTACCTAACATTAAAGTATTAATAGAAGTAGGAGTTCCTGAATGGaatattgttaaattattacaaCGGCATCCCCGGGCATTGACGAAGAAACGTGATCTGTTCAAGAAGATTGTCGCGGAAGTGAAGGTAATGAGGTTTAATGCTTTGACGGGGCAATTTCTTTTGGCTGTTGCTACATTAACACGCATAAGGAAATCCACATGGGAAAGAAAGGCTGATCTTTATAAAAGATGGGGTTGGTCTGATGATGACATTTTAGCTGCATTTGGGAGGTTTCCACATTGCATGGCAGTTTCAGAGGATAAGATTGAGATGATAATGGACTTTTTTGTCAATCAGATGGGTTGTGAATCTTCCACTGTTGCCATATATCCGCAATTGCTGGGCTTGAGCTTAAAGAAGAGAATAGTTCCAAGGGCTTCTGTCATCCAAGTTTTGTTGTCAAAAGGTTTTGTGAAACAGTTGGTCTTCCCACGGATGTTTTACGCAAGTGAAAAAGTCTTCTTGGACAAGTTTATCGCGTGTCAAGGGAAAGAAGCTGATCAACTATTGAAGCTCTATCAGGCAATAATGGAAGTTGAAcagaaaatattgta	794	0.3715	MMQVTMRGTLLPCKLLQYSPHVLQSSLQKQIIPSFDFFVSLFQSEDKFIKALKRFSSIFVLNTDAVPNIKVLIEVGVPEWNIVKLLQRHPRALTKKRDLFKKIVAEVKVMRFNALTGQFLLAVATLTRIRKSTWERKADLYKRWGWSDDDILAAFGRFPHCMAVSEDKIEMIMDFFVNQMGCESSTVAIYPQLLGLSLKKRIVPRASVIQVLLSKGFVKQLVFPRMFYASEKVFLDKFIACQGKEADQLLKLYQAIMEVEQKIL	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g01562	264	Gene3D	Transcription termination factor 3, mitochondrial	12	252	IPR038538	-
	Bva12g01562	264	Pfam	mTERF	69	234	IPR003690	GO:0003690\|GO:0006355
	Bva12g01562	264	Pfam	mTERF	14	153	IPR003690	GO:0003690\|GO:0006355
	Bva12g01562	264	PANTHER	CGI-12 PROTEIN-RELATED	14	258	IPR003690	GO:0003690\|GO:0006355
	Bva12g01562	264	SMART	mt_12	13	44	IPR003690	GO:0003690\|GO:0006355
	Bva12g01562	264	SMART	mt_12	83	113	IPR003690	GO:0003690\|GO:0006355
	Bva12g01562	264	SMART	mt_12	49	78	IPR003690	GO:0003690\|GO:0006355
	Bva12g01562	264	SMART	mt_12	152	183	IPR003690	GO:0003690\|GO:0006355
	Bva12g01562	264	SMART	mt_12	184	218	IPR003690	GO:0003690\|GO:0006355
	Bva12g01562	264	PANTHER	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	14	258	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g01562	Bva-Chr12	13419032	13420070	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Bva12g01562		mTERF	2.6e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g01562	K15032		-	twl:120012679	251.906