Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01536 ATGATGTCATATTCGAGGAGATCAAGATATTCTCGTTCTCCTTCCCCATACAAGCGTTACAGGTCTGTCTCGAGGTCTTTTTCAAGGTCAAGACGGTCAAGGAGCCCGTCAAGTGATGTAGAGAATCCTGGTAATAATTTGTACGTGACAGGCTTGTCTCCTCGGATCACTAAGAGGGAACTGGAGAAGCATTTTGCAACGGAGGGAAAAGTAATAGATGTTCATCTAGTCGTTGATCCATGGACAAGAGAATCACGTGGCTTTGGGTTTGTGACAATGGAAAATGTTGAGGATGCTGATCGATGCATAAAGTATCTGGATCGCTCTGTCCTTGAAGGGCGTGTCATCACAGTAGAGAAGTTTCTGTGGAAGCAGGCCAGAAGGCGCCGGGGTAGAACTCCAACCCCTGGAAAGTATCTTGGTCTGAGGACTGTTCATTCCCGTCGCCGCAGTCCAAGCTACTCTCCTCGTCACACTGCTAGTTATTCTCCTTACAGTGGCAGCCGGAGCCGATCCCCATACTCTTCCGATCGTAGTAGGAGCCGTTCTTACTCTGGCAGTCCAAGGAGGAGGTCCTATTCCCCTTACCATAGTCGGCGCCGATCCTATTCTCCTTATGACAGGCGCAGCCGGTCCTATTCTCGGTCCCGCTCTCCTTATAGCAGGTCACCTGTCAGTAGGCGGCGTGATAGATCATACTCACCTGATTATGATTCACCTGATGATCGCTATTACAGAAGGCACCGCTATAGGTCCGAGTCACCTGATGATCGCTATTACAGAAGGCACTATTATAGGTCAGACTCCCCTGATGACCGCTACTACAGAAGGCACCGTTATAGGTCAGTTTCCCGAAGTGCCTCTCCAAGGCGAAAGAGAAGCTCAAGGTACACTCCCAGCGTATCACCTGTGAGAAGGCGAAGCTCAAGAAGAAGCTACTCTCCAAGTGTTTCCCCAAGTCCGCGGACTGGTTCTGGGAAGCGTCGAAGTTACTCTAGAAGTCCTACTGTGAGTGCAAGTTCAAGGTCTGTATCAAGGTCTTTAAGCCGTGATTCTCCTTCGCCTTCAACTTG 1073 0.4977 MMSYSRRSRYSRSPSPYKRYRSVSRSFSRSRRSRSPSSDVENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLVVDPWTRESRGFGFVTMENVEDADRCIKYLDRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTVHSRRRSPSYSPRHTASYSPYSGSRSRSPYSSDRSRSRSYSGSPRRRSYSPYHSRRRSYSPYDRRSRSYSRSRSPYSRSPVSRRRDRSYSPDYDSPDDRYYRRHRYRSESPDDRYYRRHYYRSDSPDDRYYRRHRYRSVSRSASPRRKRSSRYTPSVSPVRRRSSRRSYSPSVSPSPRTGSGKRRSYSRSPTVSASSRSVSRSLSRDSPSPST 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01536 352 SMART rrm1_1 46 119 IPR000504 GO:0003723
Bva12g01536 352 SUPERFAMILY RNA-binding domain, RBD 35 147 IPR035979 GO:0003676
Bva12g01536 352 PANTHER TRANSFORMER-2-RELATED 8 252 - -
Bva12g01536 352 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 8 252 - -
Bva12g01536 352 MobiDBLite consensus disorder prediction 288 352 - -
Bva12g01536 352 MobiDBLite consensus disorder prediction 122 352 - -
Bva12g01536 352 MobiDBLite consensus disorder prediction 218 273 - -
Bva12g01536 352 CDD RRM_RBMX_like 44 121 - -
Bva12g01536 352 MobiDBLite consensus disorder prediction 1 46 - -
Bva12g01536 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Bva12g01536 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
Bva12g01536 352 Gene3D - 3 129 IPR012677 -
Bva12g01536 352 MobiDBLite consensus disorder prediction 149 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01536 Bva-Chr12 13108214 13110910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01536 46 128 Eukaryotic Initiation Factors Gene Family AT3G16380 31.325 4.68e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01536 - - zju:107410958 227.639