Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01527 ATGACAAAGAACACTTACTGTGGCAAAAGTGTACTTAGGAAAGGAAAGTGGACACCTGAGGAAGACAGTAAGTTGATTGCTTATGTTAGTAGATATGGCCATTGGAATTGGCAGCTACTCCCAAAATTTGCAGGTCTTGCAAGGTGTGGAAAGAGCTGTAGATTGAGATGGTTGAACTACCTGAGGCCCAATATCAGAAGAGGGAACTACActaaagaagaggaagagattATTATCCAACTGCACCAAAAGCTTGGTAATAGCTGGTCCAAGATTGCTACTCAATTACCTGGAAGATCAGATAATGAGATAAAGAACTACTGGCACTCATCTCTTAAGAAACGCTTTCTAAAGAAACCAGTCATATGTGAAAAGACCACAGCCCCCAGGGACGAGAGAAACTCGGTGATAGAGACTAATTCTTTTCGAGATACTCCAATTACTTCCAAAATATGCTACGCTTCTTCCTTGTCCCCACAGACACGGCCAAGTGAATTCTTGGGCATAACTATGGAGATAAAAGCAGAGAGCAACCTAAATGCGATTATGGAGGAAAACTTTGCTTTCTTGGATATAAACACAACTGAAGATTTCTTCGCAGAGTCATATATAGCTGACTTCTCGTATTTCCCCAATGACATATTGATCCCCATGGTGGCTGAACCTGAATATTCATATCCAGTTTATCATGCAGAACtttggaaatg 707 0.3946 MTKNTYCGKSVLRKGKWTPEEDSKLIAYVSRYGHWNWQLLPKFAGLARCGKSCRLRWLNYLRPNIRRGNYTKEEEEIIIQLHQKLGNSWSKIATQLPGRSDNEIKNYWHSSLKKRFLKKPVICEKTTAPRDERNSVIETNSFRDTPITSKICYASSLSPQTRPSEFLGITMEIKAESNLNAIMEENFAFLDINTTEDFFAESYIADFSYFPNDILIPMVAEPEYSYPVYHAELWK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01527 235 CDD SANT 69 112 IPR001005 -
Bva12g01527 235 SMART sant 66 114 IPR001005 -
Bva12g01527 235 SMART sant 13 63 IPR001005 -
Bva12g01527 235 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva12g01527 235 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Bva12g01527 235 CDD SANT 16 61 IPR001005 -
Bva12g01527 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva12g01527 235 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Bva12g01527 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 206 - -
Bva12g01527 235 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva12g01527 235 Gene3D - 14 66 - -
Bva12g01527 235 Gene3D - 69 138 - -
Bva12g01527 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva12g01527 235 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva12g01527 235 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01527 Bva-Chr12 13045732 13047401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01527 1 142 MYB Transcription Factor Family AT1G57560 52.778 6.24e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g01527 Myb_DNA-binding 7.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01527 K09422 - gmx:100810385 236.498