Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01525 ATGGAAATTCTCACACCAGCACCATATATCTCCAGCACCAACTGGGTCTTTGAAGAAAACAACAGAAGCACAAAATGGACAGCTGCAGAAAACAAACAGTTTGAAAATGCTCTTGCAGTTTACGATAAGGACACGCCGGATCGGTGGCAGAAGGTGGCGGCAATGATTCCGGGCAAGACGGTGAACGACGTGATGAAGCAGTATAAAGAGCTAGAAGTAGATGTTAGTAATATAGAAGCTGGTTTGATTCCAATTCCAGGTTATAGCAGCACTGCTTCACCTTTCACTTTGGATTGGGTTAACACTTCTGGGTATGATGGGTTTAAGGGTATTGGTGGAAAAAGATCCTCTGCAGGCAGACCACCTGaacaggaaagaaagaaaggagttCCATGGACAGAAGAAGAGCAtaaaTTGTTTTTACTGGGCTTGAAGAAGTATGGAAAAGGTGATTGGAGAAATAtctcaagaaattttgttattactAGAACACCAACCCAAGTGGCTAGCCATGCTCAGAAATACTTCATAAGGCAACTCTCAGGAGGGAAGGACAAGAGAAGAGCTAGCATCCATGACATAACAACAGTTAACCTAAATGACACCACAAGAACTCCTTCTCCGGCGAAAGATGGCGGTGCTGCCGCCACGAAATCTAGTTCACCACAGCATTCTATGATGCTTTCCCACCTCCAccatcaccaccaccaccagcaGCAACCTAATTCTCCTGCCACAACACCAAGAGCACAATTCCAATGGAACCAGCCAAATGCAGGGGTTGCCATGGGTGCTGCACATGAAAAAATGTTCATGTCTCCTTATGGGGTCAACTCTTATGGCCTTAAAATGCAGAGCCAATTCCAAAATCTGCGTAGAACTGCTGCTCCTGCTCTTCAAGAATCTTCTTACTTACCACCTCAGACTCAAAACATGGTTTTCCAAACCCAAAGCTATTCCCGTGCATG 968 0.4215 MEILTPAPYISSTNWVFEENNRSTKWTAAENKQFENALAVYDKDTPDRWQKVAAMIPGKTVNDVMKQYKELEVDVSNIEAGLIPIPGYSSTASPFTLDWVNTSGYDGFKGIGGKRSSAGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLNDTTRTPSPAKDGGAAATKSSSPQHSMMLSHLHHHHHHQQQPNSPATTPRAQFQWNQPNAGVAMGAAHEKMFMSPYGVNSYGLKMQSQFQNLRRTAAPALQESSYLPPQTQNMVFQTQSYSRA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01525 322 Pfam Myb-like DNA-binding domain 131 176 IPR001005 -
Bva12g01525 322 Pfam Myb-like DNA-binding domain 25 69 IPR001005 -
Bva12g01525 322 MobiDBLite consensus disorder prediction 187 251 - -
Bva12g01525 322 CDD SANT 25 71 IPR001005 -
Bva12g01525 322 Gene3D - 15 85 - -
Bva12g01525 322 ProSiteProfiles SANT domain profile. 132 180 IPR017884 -
Bva12g01525 322 SMART sant 128 178 IPR001005 -
Bva12g01525 322 SMART sant 22 74 IPR001005 -
Bva12g01525 322 MobiDBLite consensus disorder prediction 112 131 - -
Bva12g01525 322 Gene3D - 130 180 - -
Bva12g01525 322 ProSiteProfiles Myb-like domain profile. 124 176 IPR001005 -
Bva12g01525 322 ProSiteProfiles SANT domain profile. 21 76 IPR017884 -
Bva12g01525 322 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 295 IPR043363 -
Bva12g01525 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 180 IPR017930 -
Bva12g01525 322 PANTHER MYB TRANSCRIPTION FACTOR MYB51 3 295 - -
Bva12g01525 322 CDD SANT 131 176 IPR001005 -
Bva12g01525 322 ProSiteProfiles Myb-like domain profile. 18 72 IPR001005 -
Bva12g01525 322 SUPERFAMILY Homeodomain-like 21 71 IPR009057 -
Bva12g01525 322 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 127 179 IPR006447 GO:0003677
Bva12g01525 322 MobiDBLite consensus disorder prediction 193 207 - -
Bva12g01525 322 SUPERFAMILY Homeodomain-like 125 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01525 Bva-Chr12 13020924 13023074 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g01525 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01525 - - gmx:778181 410.609