Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01510 ATGGAATCAAGAAGAGGAGTGGTTGATGGAGTTGATGTTGGTCCAGCTTATGGGTATGGGCATATTTTGAAGGCAAACCCTACAGTGCATAGGCACCGTCCACCATTGACAGCCATAGACAGGTTCTTGTGGAGCCAACAAAGCCAATTCTCTCAAGAACAAGCACAAAACATGGCAAAGAAAAGTGCTGCTAGGGTTCCGGCTACCGGCTTCCTCGGCTTTACATGCTCGAGTGATGCAACCTTGAAGTTTATGTGGCCCAATTCTGCTCGAGAAGTAAGTTTTGTTAATGAAGAGAGCTTCAATTGGAGACACTACTCTCAAGCCCCAACTTTGTGCcggaaagaaaacatggaagatTTAGTGAAGAACACAAAAGGGGTTGGAAGGAGAAACAAGAAGGGTTCTTCTGTCACTTTGATCAAAGGAAACTGGACTGAGGAAGAAGATAGGAAACTGATAAGACTTGTAAAGCAAtatggagaaagaaaatgggcaATAATAGCTCAGAATTTGGCTGGAAGAGCAGGCAAGCAATGTAGAGAGAGATGGCATAATCACTTGAGGCCAGATATTAAGAAAGATACCTggagtgaagaagaagagaaaatactagtGGAAACTCATGCCAGAGTTGGAAATCGTTGGGCTGAAATCGCAAAGCACATTAATGGAAGGACAGAAAATGCCATAAAAAATCATTGGAATGCCACCAAAAGAAGGCAGAATTCAAAAAGGAAGAACAAGAAAGCAGAAAACTCAGATAAAAAGCCACAGTCTTGTATTCTTCAAGATTATATCAGAAGCAAAATGATTAGTGAAAATTCAACAAACCCTAATCAAAGCACTGACACTACTGCTACTTCTGACACAACACCCTCTAGCTCGACTGTGATCTGTGAGGACCCATCAAGCCAATTGAATCTTGTAATCTCTGAACCCTCTGAATCTGTTACTAATGATGAAAATTCATCACAGCTATTAGCTGAGCCTTATGATGATGAGCTTCTCTTCATGCAAAGTTTTTTTGCTGAGACTAAGAATCAGCAGCATCTCATTGAAACTGCTAAGCACTCCAATGACTCTGAAACCTCATTCTCTTTGGATTTTTGTGATCAAGTATTCAATGTTGCTGATTGCGGATTTGGCTTTTCCAATCCGAACCCCGATGAGAACAtgaacaaggaagagaatcTTTTTGGTAAAGAAAATTCCACTAACACTAAACACTGTCAGTCTGATCTCTATCTTTCTCACTTGTTGAATGGAGCACCCAATTCATCACCTTTCTGTGACAATGGGTACCAAAAACTGAACATGGATTTGCTGAAGCCAGAGAATCATGCTTA 1349 0.3847 MESRRGVVDGVDVGPAYGYGHILKANPTVHRHRPPLTAIDRFLWSQQSQFSQEQAQNMAKKSAARVPATGFLGFTCSSDATLKFMWPNSAREVSFVNEESFNWRHYSQAPTLCRKENMEDLVKNTKGVGRRNKKGSSVTLIKGNWTEEEDRKLIRLVKQYGERKWAIIAQNLAGRAGKQCRERWHNHLRPDIKKDTWSEEEEKILVETHARVGNRWAEIAKHINGRTENAIKNHWNATKRRQNSKRKNKKAENSDKKPQSCILQDYIRSKMISENSTNPNQSTDTTATSDTTPSSSTVICEDPSSQLNLVISEPSESVTNDENSSQLLAEPYDDELLFMQSFFAETKNQQHLIETAKHSNDSETSFSLDFCDQVFNVADCGFGFSNPNPDENMNKEENLFGKENSTNTKHCQSDLYLSHLLNGAPNSSPFCDNGYQKLNMDLLKPENHA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01510 449 ProSiteProfiles Myb-like domain profile. 189 239 IPR001005 -
Bva12g01510 449 SUPERFAMILY Homeodomain-like 140 235 IPR009057 -
Bva12g01510 449 CDD SANT 144 188 IPR001005 -
Bva12g01510 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 192 IPR017930 -
Bva12g01510 449 MobiDBLite consensus disorder prediction 225 260 - -
Bva12g01510 449 Pfam Myb-like DNA-binding domain 145 203 - -
Bva12g01510 449 PANTHER MYB PROTEIN-RELATED 133 395 - -
Bva12g01510 449 MobiDBLite consensus disorder prediction 273 300 - -
Bva12g01510 449 Gene3D - 141 193 - -
Bva12g01510 449 Gene3D - 195 263 - -
Bva12g01510 449 SMART sant 193 241 IPR001005 -
Bva12g01510 449 SMART sant 141 190 IPR001005 -
Bva12g01510 449 CDD SANT 196 239 IPR001005 -
Bva12g01510 449 ProSiteProfiles Myb-like domain profile. 137 188 IPR001005 -
Bva12g01510 449 PANTHER MYB DOMAIN PROTEIN 64-RELATED 133 395 - -
Bva12g01510 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 243 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01510 Bva-Chr12 12904994 12907582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01510 29 427 MYB Transcription Factor Family AT5G58850 42.410 5.68e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g01510 Myb_DNA-bind_6 1.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01510 K09422 - qsu:111985900 373.244