Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01507 ATGGCCGTCAAACCCTCAAGGGCCCAGAAGAAGGTCCATTACGACCAGAAGCTATGCCGTCTTCTCGGCGAGTATTCTCAGGTACTCATCGTCGGTGCCGATAACGTTGGTTCGAAGCAAATGCAGGATATTCGCACGGGCATCCGAGGTGACTCCATCATCCTGATGGGGAAGAACACTATGATGAAACGATCAATCAAGAGGCATGCTGAGATGACTGGAAACGAGGCCGTCCTGAGTCTCATTCCTCTGCTAGTGGGAAACGTGGGAATGTTATTCACAAAGGGTGATTTGAAGGAAGTGAGAGACGAGATTGCCAAGTACAAGGTGGGAGCTCCGGCTCGTGTTGGCCTTGTGGCCCCAATTGATGTTGTTGTGCCCCCAGGAAACACTGGACTAGATCCTTCGCAGACTTCTTTCTTTCAGGTTCTCAACATTGCAACCAAGATCAACAAAGGGACTGTTGAAATTATTTCCTCGGTGGAAATCATTAAGCAAGGTGAGAAAGTGGGTTCATCTGAGGCTGCCCTCTTATCCAAGCTTGGGATAAGACCATTTTCATATGGACTTATAGTCACCAATATCTACGATAATGGATCAATCTTCAGTCCTGCGGTTCTTGATCTTACTGAAGACGACCTTGTTGCAAAGTTTGCAGCTGGGGTTTCCATGGTCACCTCATTGTCCTTAGCCATCTCATACCCATCGCTTGCTGCAGCACCGCACATGTTTATCAATGGATACAAGAATGTTCTGGCCGTTGCCGTGGCTACAGAGTATAGCTTCCCTCAAGCTGAAGAAGTCAAGGAGTACTTGAAGGATCCCAGCAAGTTTGCATCTGCCGTGGCTTCTACGGCTGTTGTTTCTGATGCTGCACCTGCTACTGAAGCAGCAAAGgaggagaagaaggaagaaccAGAGGAAGAATCTGATGACGAGCCTATGCTTAATCTGTTTGATGAATG 965 0.4694 MAVKPSRAQKKVHYDQKLCRLLGEYSQVLIVGADNVGSKQMQDIRTGIRGDSIILMGKNTMMKRSIKRHAEMTGNEAVLSLIPLLVGNVGMLFTKGDLKEVRDEIAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIATKINKGTVEIISSVEIIKQGEKVGSSEAALLSKLGIRPFSYGLIVTNIYDNGSIFSPAVLDLTEDDLVAKFAAGVSMVTSLSLAISYPSLAAAPHMFINGYKNVLAVAVATEYSFPQAEEVKEYLKDPSKFASAVASTAVVSDAAPATEAAKEEKKEEPEEESDDEPMLNLFDE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01507 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-LIKE 1 320 - -
Bva12g01507 321 PIRSF L10E 1 320 IPR030670 GO:0042254
Bva12g01507 321 MobiDBLite consensus disorder prediction 305 321 - -
Bva12g01507 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Bva12g01507 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 320 - -
Bva12g01507 321 MobiDBLite consensus disorder prediction 291 321 - -
Bva12g01507 321 CDD Ribosomal_P0_L10e 9 185 - -
Bva12g01507 321 Pfam 60s Acidic ribosomal protein 235 313 - -
Bva12g01507 321 Pfam Ribosomal protein L10 8 108 IPR001790 -
Bva12g01507 321 SUPERFAMILY Ribosomal protein L10-like 9 134 IPR043141 -
Bva12g01507 321 Gene3D - 114 185 IPR043164 -
Bva12g01507 321 Gene3D - 6 209 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01507 Bva-Chr12 12872717 12875135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01507 1 284 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 78.169 3.92e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01507 K02941 - vvi:100250067 471.855