Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01473 ATGGCTCCAGGGCCCCAAAAGGTGATGCAGGTAGACGAGAGAGAAGAGGTTAATTCTGATGATGAGCGGAAGAAAAACAGCGTGAATGCTTTGCCGTTCTTTAAACTCTTGAGCTATGCTGATACATTGGATTGGACTCTGATGGCACTGGGAACTCTCGGTTCGATCGTGCATGGCATGGCTCTACCCGTTGGGTATCTGTTATTAGGAAAAGCGCTTAATGCATATGGGAACCACATTGATAACCCTGACGAAATGGTTAAAGCTCTCAAAAAGGTTGTTCCGTTTGTGTGGTATATGGCCTTTGCCACATTTCCTGCTGGAGTGCTTGAGACCGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATCCCGCCTGAGATTAGCATATCTAAAGGCAGTCCTCTGCCAAGAGATTGGGGCTTTCGATACAGAATTAACAAGTGGAAAAGTCATAAGTGGAATAACAAACCATATGAGTATCATCCAAGACGCTATTGGGGAGAAGTTGGGACACTTtacctcaaacttctcaacttTCTTTGCTGGACTTGTGATTGCTGCCATATGCTGTTGGGAAATAGCTCTGCTCTGTTTATTGGTTGTTCCACTGATTCTTATAATCGGGGCCACTTACACCAAGAAAATGAACAACATATCTGCGACCAAAATGCTTTACCATTCCGAAGTTACAGCCATGATAGAGCAGACGATATCACATATAAAAACGGTATATGCATTCGTGGGAGAGATTTCTGCAGTCAAATCCTTCACAGAGAACATGGGCAAGCAATATCTTGTAAGCAAAGGAGAAGCACTTATAAAGGGAGTTGGAACAGGAATGTTTCAAACCGTGAGCTTCGTTTCTTGGGCTTTCATTGTATGGGTTGGAGCTGTTGTAGTCGTAGCCGGGAAAGCAAAAGGAGGAGACATAATAGCTGCAGTAATGAGCATTCTCTTTGGTGCCATATCTCTCACTTATGCCGCACCAGACATGCAAATATTCAATCAGGCAAAAGCCGCAGGTTATGAGGTCTTCCAAGTGATCCATAGAAAGCCATTAATAACGAATGGATCGAGAAGGAGGAAGCCCAAGATGATAAAAGGCAGCATTGATATACGTGATGTTCACTTTTCCTACCCGTCGCGGCCAGAGAAACCTATCCTTCAAGGATTCTCCTTGTCAATTCCAGCAGGAAAGACAGTGGCACTGGTCGGTAGCAGTGGGTGTGGAAAGAGTACCATCATCTCCCTTGTTTCTAGATTTTATGACCCCTCAAAAGGAGAGATTTTCATTGATCGCCACAATATCAAGGATCTTGACCTGAAGTTCCTGCGACAAATCATGGGAGCTGTTTCCCAAGAACCATCTCTCTTTTCTGGCACCATCAAGGATAACTTGAAAGTAGGAGATCCGGACGCAGATGATCAAGAGATTCAGTATGCAGCAGTGATGTCAAACGCCCACTCTTTCATATCACAGCTTCCTGATCAGTATCAAACAGAGGTAGGACAGAGGGGTGTCCAATTATCCGGAGGCCAAAAACAGAGAATAGCAATTGCAAGAGCCATTCTGAAAGATCCCCAAATCCTTTTACTTGATGAGGCCACCAGTGCCCTGGATTCAGAGTCAGAAGTGGTCGTTCAAGAAGCACTTGAGAAAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTGTCAACAGTCATAAATGCAGATATGATAGCTGTTGTAGAGAACGGGCAAGTTTCAGAGCTAGGAAACCACCATAGTTTGCTAAACACAAGCAGGTTCTACAGCAACTTATTCAGTATGCAGAACCTTGAAGCAGTTGGCAGCTCCAGCGCCACAAGTTCCAAAAATGAAGATGCAATTCCCCACCAAGAAGATTATTCTGAGGAGactaaatcaaaaaagaagCACAGGGAGACCCAAATACAAGTTACCAAGCATTCTgcggaagaggaagaaaagagcAGAATACAATCAAGTATATTTTTCAGAATCTGGTTCGGtttgaaaaagagagagcTAGCGAAAATTGCTATTGGCTCCTTTGCAGCAGTTTTCTCGGGCGTCAATAAGCCAATTTTTGGATACTTCATCATCACCATTGGTGTAGCATACTTTGACCCCGATGCAAAGCGGAAAGTTGGATTATATTCAGTTTTCTTCGCTGGAGTTGGTTTGCTTTCATTATTCAGCAACACCTTGCAACATTACCTTTTCGGAGTAGTTGGAGAAAAGGCTATGGCAAATCTGAGACGTGCGCTGTATTCAGGTGCTCTTCGCAATGAAGTAGGATGGTTTGAGAAACCTGAGAACAGTGTTGGTTCACTAACTTCACGCATCATCAGTGACACAGCCATGGTTAAGATCATAATTGCTGATCGCATGTCTGTGATTGTGCAATGTATTTCTTCCATAATGATAGCAACAATTGTCAGCATGATTGTTAACTGGAGAATGGCTTTGGTAGCATGGGCTGTGATGCCGTGTCACTTCATCGGTGGTCTGATCCAGGCAAAGTCTGCCAAAGGATTTTCAGGTGACCACTCTGCTGCACATTCTGAGCTCGTTTCCCTTGCATCTGAGTCAGCAACCAACATAAGGACTGTTGCGTCATTTTGCCTTGAAGAGGATGTACTGAGGAAAGCCAAAATATCTCTGGAGATCCCAAGGAGAAGGTGTAAGAAAGACAGTATAAAATATGGGATCATTCAAGGTATCTCTCTTTGCTTGTGGAACATTGCACATGCCGTTGCTTTATGGTACACAACAATTTTGGTTGACAGGGGTCAAGCCAAGTTTGAAAATGGCATAAGAGCATACCAGATTTTTTCTCTCACAGTTCCTTCCATCACAGAATTATACACACTGATCCCAACTGTCATCTCCGCTATCAATATCCTCACTCCAGCATTCAGAACCCTTGattataaaaccaaaattgCACCAGATACACCAGGAGAATCCGATTCTGAGAGAATCCAAGGAAGAGTTGAATTCCAAAATGTAAATTTCAACTACCCATTAAGACCTGAGGTGACTGTTCTCGACAATTTCAGTTTAAAAATTGAAGCTGGCTCGAAGGTGGCTTTTGTAGGGCCAAGTGGAGCTGGAAAATCCTCCGTTTTGGCCCTTTTACTTAGATTCTATGATCCATTGGAGGGAAAGGTACTTACTGATGGTAAAGACATACAAGAATATAATCTAAGATGGTTGAGGACACAAATAGGACTGGTACAGCAAGAGCCGTTGCTTTTTAACTGCTCAATTAGAGACAACATTTGCTATGGTAACAATGGGGCTTCTGAAAGTGAAATAATGGAGGTATCAAGAGAAGCAAACATACATGAATTCATAAGCAATCTACCAAATGGATATCAGACTGTTGTTGGGGAAAAAGGCTGCCAGCTTTCAGGAGGACAAAAACAGAGAATAGCCATTGCCAGAACCTTACTGAAGAAGCCTGCAATTTTACTCCTTGATGAAGCAACAAGTGCTCTTGATGTTGAATCTGAAAGAGCTATAGTAAGTGctttgaaaacaataaatcaGAAAGAATACAGTGGCTTGTATTCAGCAACCACCCAGATCACAGTAGCGCATAGGCTTTCCACAATAAGAAACTCAGATACCATAGTTGTCATGGACAAAGGTAAAATTGTAGAGATGGGTTCCCACCTAACTCTCATAGCAGCAGAGGAAGGACTTTATTCGAGATTAGTCAAGTTACAAAGCTTTGAAGAAAGGTG 3764 0.4195 MAPGPQKVMQVDEREEVNSDDERKKNSVNALPFFKLLSYADTLDWTLMALGTLGSIVHGMALPVGYLLLGKALNAYGNHIDNPDEMVKALKKVVPFVWYMAFATFPAGVLETGCWMYASERQLSRLRLAYLKAVLCQEIGAFDTELTSGKVISGITNHMSIIQDAIGEKLGHFTSNFSTFFAGLVIAAICCWEIALLCLLVVPLILIIGATYTKKMNNISATKMLYHSEVTAMIEQTISHIKTVYAFVGEISAVKSFTENMGKQYLVSKGEALIKGVGTGMFQTVSFVSWAFIVWVGAVVVVAGKAKGGDIIAAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQVIHRKPLITNGSRRRKPKMIKGSIDIRDVHFSYPSRPEKPILQGFSLSIPAGKTVALVGSSGCGKSTIISLVSRFYDPSKGEIFIDRHNIKDLDLKFLRQIMGAVSQEPSLFSGTIKDNLKVGDPDADDQEIQYAAVMSNAHSFISQLPDQYQTEVGQRGVQLSGGQKQRIAIARAILKDPQILLLDEATSALDSESEVVVQEALEKAMQGRTVILIAHRLSTVINADMIAVVENGQVSELGNHHSLLNTSRFYSNLFSMQNLEAVGSSSATSSKNEDAIPHQEDYSEETKSKKKHRETQIQVTKHSAEEEEKSRIQSSIFFRIWFGLKKRELAKIAIGSFAAVFSGVNKPIFGYFIITIGVAYFDPDAKRKVGLYSVFFAGVGLLSLFSNTLQHYLFGVVGEKAMANLRRALYSGALRNEVGWFEKPENSVGSLTSRIISDTAMVKIIIADRMSVIVQCISSIMIATIVSMIVNWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDHSAAHSELVSLASESATNIRTVASFCLEEDVLRKAKISLEIPRRRCKKDSIKYGIIQGISLCLWNIAHAVALWYTTILVDRGQAKFENGIRAYQIFSLTVPSITELYTLIPTVISAINILTPAFRTLDYKTKIAPDTPGESDSERIQGRVEFQNVNFNYPLRPEVTVLDNFSLKIEAGSKVAFVGPSGAGKSSVLALLLRFYDPLEGKVLTDGKDIQEYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNGASESEIMEVSREANIHEFISNLPNGYQTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDVESERAIVSALKTINQKEYSGLYSATTQITVAHRLSTIRNSDTIVVMDKGKIVEMGSHLTLIAAEEGLYSRLVKLQSFEER 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01473 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1247 IPR003439 GO:0005524
Bva12g01473 1254 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524
Bva12g01473 1254 MobiDBLite consensus disorder prediction 616 657 - -
Bva12g01473 1254 PANTHER BRACHYTIC2 19 1252 - -
Bva12g01473 1254 MobiDBLite consensus disorder prediction 1 23 - -
Bva12g01473 1254 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Bva12g01473 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g01473 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 48 345 - -
Bva12g01473 1254 PANTHER ABC TRANSPORTER B FAMILY 19 1252 - -
Bva12g01473 1254 Pfam ABC transporter 1021 1170 IPR003439 GO:0005524
Bva12g01473 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1249 IPR027417 -
Bva12g01473 1254 SMART AAA_5 1030 1224 IPR003593 -
Bva12g01473 1254 SMART AAA_5 398 584 IPR003593 -
Bva12g01473 1254 Gene3D - 993 1254 IPR027417 -
Bva12g01473 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 49 337 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g01473 1254 MobiDBLite consensus disorder prediction 625 657 - -
Bva12g01473 1254 Pfam ABC transporter 389 538 IPR003439 GO:0005524
Bva12g01473 1254 SUPERFAMILY ABC transporter transmembrane region 672 981 IPR036640 GO:0005524|GO:0016021
Bva12g01473 1254 CDD ABC_MTABC3_MDL1_MDL2 371 608 - -
Bva12g01473 1254 MobiDBLite consensus disorder prediction 9 23 - -
Bva12g01473 1254 Gene3D - 361 609 IPR027417 -
Bva12g01473 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 608 IPR027417 -
Bva12g01473 1254 CDD ABC_MTABC3_MDL1_MDL2 1003 1249 - -
Bva12g01473 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 986 - -
Bva12g01473 1254 Pfam ABC transporter transmembrane region 685 941 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g01473 1254 Pfam ABC transporter transmembrane region 49 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g01473 1254 SUPERFAMILY ABC transporter transmembrane region 35 353 IPR036640 GO:0005524|GO:0016021
Bva12g01473 1254 Gene3D ABC transporter type 1, transmembrane domain 35 964 IPR036640 GO:0005524|GO:0016021
Bva12g01473 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01473 Bva-Chr12 12652740 12658484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01473 21 1251 Calmodulin-binding Proteins AT2G36910 40.174 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01473 K05658 - zju:107414909 1821.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01473 12 12652740 12658484 Bva12g01473 12 12652740 12658484 ECH