Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01466 ATGGAAACTTCGGGTGCTAATTCAGACCAATACGCCAATTCTTCTGCATCATCATCCGCAGGAGGTTTAAATGCTGCTACTAACAGTAATAGCAATGCTGTAACATGGTATGGAATGCGGTTGCCTGCTGTGAGCCCCCTTCGTTCtccactttctttcttattggaTTACTCGGGCATTCTCCGCACAAGCACCACATCCCATGATTATGGGGCTGTAACAGTCAACGACGGTGTTCCCGCTTCGGAATTACGACCCCAGCTTCGAATTCAGTCGCTTGACCCTGTTGCTGGCACCTCGTGCAGTAGCACCAGCAGTACTGGGGAGGTCTCTATACGGATCATTGGAGCTGGAGAACAAGACCACAATGCAGGGTTAGGTTCTGTTTCTGCACCTTCACAAAATCATCTTGGAGAAGTTGGGTATGTTGATAATGATGATTTGATGGGAAATAGAGGTAGAGTTCCCACATTGgaggatgaagaagaggaCCGTAGTGGAATTGTGGTCGGCGAGAGAGTTCCTCTTGTCTCTACATCTTCATCAACTGGTAGTGGACATGTAGATGGGGATACTGGTGATGGCTTGGAAAGTAACAGTAGGGATTCGTCCTCTTACCAGCGCTATGATATTCAGCAGGTTGCAAGATGGATTGAGCagattcttcctttctctttgttgttgttggtGGTTTTCATTCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATTTCAGCTGTGATGTTCAAGTCTAATGAAATTGTTAAGAAGCAGACAGCTTTGAAGGGAGATAGAAAAGTACCTATTCTTGTCGGTATCTCTTTTGCTTTCATGCTTCACGTAATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGTCATGCTTCCTCCAAATGTGTCACCTCCTTTCTGGCACGCAATATTCACCATTTTGGTTAATGATACATTAGTGAGGCAAGTAGCAATGTCTTTCAAGTGTTTACTTCTTATATATTACAAGAATGGAAAAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTTGAGTACACACTGCTGTTGTATCGAGTGTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTAAACAAGGATTATGGAAGTTTGTTTTCATCGCTGACCACAGGATTGTATTTAACTTTCAAGCTAACTTCTGTTGTTGAGAAgGTCCAATACTTCCTTTCTGCCTTAAAAGCATTTTCAAGAAAGGAAGTTCATTATGGGGTTTATGCGACAATGGAACAGGTAAATGCAGCAGGCGACCTATGTGCTATATGCCAAGAGAAGATGCATTCTCCTATCTTGTTGCGCTGTAAACATATTTTCTGTGAGGAGTGCGTGTCAGAATGGTTCGAGAGAGAAAGGACTTGCCCACTATGCAGGGCATTGGTGAAACCCGCTGATCTGCGGACCTTTGGGGACGGATCAACAAGTCTGCTTTTCCAGTTGTTTTA 1502 0.4194 METSGANSDQYANSSASSSAGGLNAATNSNSNAVTWYGMRLPAVSPLRSPLSFLLDYSGILRTSTTSHDYGAVTVNDGVPASELRPQLRIQSLDPVAGTSCSSTSSTGEVSIRIIGAGEQDHNAGLGSVSAPSQNHLGEVGYVDNDDLMGNRGRVPTLEDEEEDRSGIVVGERVPLVSTSSSTGSGHVDGDTGDGLESNSRDSSSYQRYDIQQVARWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVPILVGISFAFMLHVMCIYWWYRNDDLLYPLVMLPPNVSPPFWHAIFTILVNDTLVRQVAMSFKCLLLIYYKNGKGHNFRRQGQMLTLVEYTLLLYRVLLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQYFLSALKAFSRKEVHYGVYATMEQVNAAGDLCAICQEKMHSPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLLFQLF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01466 500 MobiDBLite consensus disorder prediction 1 24 - -
Bva12g01466 500 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 500 - -
Bva12g01466 500 CDD RING-HC_RNFT1_like 438 477 - -
Bva12g01466 500 ProSiteProfiles Zinc finger RING-type profile. 439 477 IPR001841 -
Bva12g01466 500 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 500 IPR044235 GO:0061630|GO:1904294
Bva12g01466 500 ProSitePatterns Zinc finger RING-type signature. 454 463 IPR017907 -
Bva12g01466 500 MobiDBLite consensus disorder prediction 140 202 - -
Bva12g01466 500 Pfam Zinc finger, C3HC4 type (RING finger) 437 480 - -
Bva12g01466 500 MobiDBLite consensus disorder prediction 153 169 - -
Bva12g01466 500 SUPERFAMILY RING/U-box 429 482 - -
Bva12g01466 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 487 IPR013083 -
Bva12g01466 500 SMART ring_2 439 476 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01466 Bva-Chr12 12607303 12612773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01466 1 500 C3H Transcription Factor Family AT5G01960 57.884 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01466 - K22379 zju:107414042 603.979